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用于将三键J耦合与蛋白质主链扭转角相关联的卡尔普斯方程具有高精度。

High accuracy of Karplus equations for relating three-bond J couplings to protein backbone torsion angles.

作者信息

Li Fang, Lee Jung Ho, Grishaev Alexander, Ying Jinfa, Bax Ad

机构信息

Laboratory of Chemical Physics, National Institute of Diabetes and Digestive and Kidney Diseases, National Institutes of Health, Bethesda, MD 20892 (USA).

出版信息

Chemphyschem. 2015 Feb 23;16(3):572-8. doi: 10.1002/cphc.201402704. Epub 2014 Dec 15.

Abstract

(3) JC'C' and (3) JHNHα couplings are related to the intervening backbone torsion angle ${\varphi }$ by standard Karplus equations. Although these couplings are known to be affected by parameters other than ${\varphi }$, including H-bonding, valence angles and residue type, experimental results and quantum calculations indicate that the impact of these latter parameters is typically very small. The solution NMR structure of protein GB3, newly refined by using extensive sets of residual dipolar couplings, yields 50-60 % better Karplus equation agreement between ${\varphi }$ angles and experimental (3) JC'C' and (3) JHNHα values than does the high-resolution X-ray structure. In intrinsically disordered proteins, (3) JC'C' and (3) JHNHα couplings can be measured at even higher accuracy, and the impact of factors other than the intervening torsion angle on (3) J will be smaller than in folded proteins, making these couplings exceptionally valuable reporters on the ensemble of ${\varphi }$ angles sampled by each residue.

摘要

(3)JC'C'和(3)JHNHα耦合通过标准的卡尔普斯方程与中间的主链扭转角φ相关。尽管已知这些耦合会受到除φ之外的其他参数影响,包括氢键、价键角和残基类型,但实验结果和量子计算表明,后述这些参数的影响通常非常小。通过使用大量残余偶极耦合集重新精修的蛋白质GB3的溶液核磁共振结构,与高分辨率X射线结构相比,在φ角与实验(3)JC'C'和(3)JHNHα值之间的卡尔普斯方程一致性要高出50 - 60%。在内在无序蛋白质中,(3)JC'C'和(3)JHNHα耦合能够以更高的精度测量,并且除中间扭转角之外的因素对(3)J的影响将比折叠蛋白质中的更小,这使得这些耦合成为每个残基采样的φ角集合的极其有价值的报告分子。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/788f/4329088/129e5f070eed/nihms657548f1.jpg

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