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平行回火模拟中最优温度间距的叠加增强估计

Superposition-Enhanced Estimation of Optimal Temperature Spacings for Parallel Tempering Simulations.

作者信息

Ballard Andrew J, Wales David J

机构信息

University Chemical Laboratories, University of Cambridge , Lensfield Road, Cambridge CB2 1EW, United Kingdom.

出版信息

J Chem Theory Comput. 2014 Dec 9;10(12):5599-5605. doi: 10.1021/ct500797a. Epub 2014 Nov 4.

DOI:10.1021/ct500797a
PMID:25512744
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC4262936/
Abstract

Effective parallel tempering simulations rely crucially on a properly chosen sequence of temperatures. While it is desirable to achieve a uniform exchange acceptance rate across neighboring replicas, finding a set of temperatures that achieves this end is often a difficult task, in particular for systems undergoing phase transitions. Here we present a method for determination of optimal replica spacings, which is based upon knowledge of local minima in the potential energy landscape. Working within the harmonic superposition approximation, we derive an analytic expression for the parallel tempering acceptance rate as a function of the replica temperatures. For a particular system and a given database of minima, we show how this expression can be used to determine optimal temperatures that achieve a desired uniform acceptance rate. We test our strategy for two atomic clusters that exhibit broken ergodicity, demonstrating that our method achieves uniform acceptance as well as significant efficiency gains.

摘要

有效的并行回火模拟关键依赖于精心选择的温度序列。虽然期望在相邻副本之间实现均匀的交换接受率,但找到一组能达到此目的的温度通常是一项艰巨的任务,特别是对于经历相变的系统。在此,我们提出一种基于势能景观中局部最小值知识来确定最优副本间距的方法。在谐波叠加近似的框架内,我们推导出并行回火接受率作为副本温度函数的解析表达式。对于特定系统和给定的最小值数据库,我们展示了如何使用此表达式来确定能实现所需均匀接受率的最优温度。我们对两个表现出遍历性破坏的原子团簇测试了我们的策略,证明我们的方法实现了均匀接受率并显著提高了效率。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d5af/4262936/bf0e1c069ccc/ct-2014-00797a_0007.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d5af/4262936/3964c6a352cc/ct-2014-00797a_0002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d5af/4262936/9ac682c67487/ct-2014-00797a_0003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d5af/4262936/3f4fc3dda6af/ct-2014-00797a_0004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d5af/4262936/6014adb900b6/ct-2014-00797a_0005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d5af/4262936/9fcca10f3d1e/ct-2014-00797a_0006.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d5af/4262936/bf0e1c069ccc/ct-2014-00797a_0007.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d5af/4262936/3964c6a352cc/ct-2014-00797a_0002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d5af/4262936/9ac682c67487/ct-2014-00797a_0003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d5af/4262936/3f4fc3dda6af/ct-2014-00797a_0004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d5af/4262936/6014adb900b6/ct-2014-00797a_0005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d5af/4262936/9fcca10f3d1e/ct-2014-00797a_0006.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d5af/4262936/bf0e1c069ccc/ct-2014-00797a_0007.jpg

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本文引用的文献

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Optimized explicit-solvent replica exchange molecular dynamics from scratch.从头开始优化的显式溶剂副本交换分子动力学。
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Solid-solid structural transformations in Lennard-Jones clusters: accurate simulations versus the harmonic superposition approximation.Lennard-Jones 团簇中的固-固结构转变:精确模拟与谐波叠加近似
J Phys Chem A. 2007 Oct 18;111(41):10284-91. doi: 10.1021/jp072929c. Epub 2007 Aug 9.
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Low-temperature structural transitions: circumventing the broken-ergodicity problem.低温结构转变:规避遍历性破缺问题。
Phys Rev Lett. 2007 Mar 9;98(10):105701. doi: 10.1103/PhysRevLett.98.105701. Epub 2007 Mar 8.