Dudev Todor, Devereux Mike, Meuwly Markus, Lim Carmay, Piquemal Jean-Philip, Gresh Nohad
Faculty of Chemistry and Pharmacy, University of Sofia, 1164 Sofia, Bulgaria.
J Comput Chem. 2015 Feb 15;36(5):285-302. doi: 10.1002/jcc.23801. Epub 2014 Dec 24.
The alkali metal cations in the series Li(+)-Cs(+) act as major partners in a diversity of biological processes and in bioinorganic chemistry. In this article, we present the results of their calibration in the context of the SIBFA polarizable molecular mechanics/dynamics procedure. It relies on quantum-chemistry (QC) energy-decomposition analyses of their monoligated complexes with representative O-, N-, S-, and Se- ligands, performed with the aug-cc-pVTZ(-f) basis set at the Hartree-Fock level. Close agreement with QC is obtained for each individual contribution, even though the calibration involves only a limited set of cation-specific parameters. This agreement is preserved in tests on polyligated complexes with four and six O- ligands, water and formamide, indicating the transferability of the procedure. Preliminary extensions to density functional theory calculations are reported.
锂(Li⁺)至铯(Cs⁺)系列中的碱金属阳离子在多种生物过程和生物无机化学中起着主要作用。在本文中,我们展示了它们在SIBFA可极化分子力学/动力学程序背景下的校准结果。该程序依赖于对它们与具有代表性的氧(O)、氮(N)、硫(S)和硒(Se)配体的单配位络合物进行量子化学(QC)能量分解分析,这些分析是在Hartree-Fock水平上使用aug-cc-pVTZ(-f)基组进行的。尽管校准仅涉及一组有限的阳离子特异性参数,但对于每个单独的贡献都与量子化学结果达成了密切一致。这种一致性在对具有四个和六个氧配体、水和甲酰胺的多配位络合物的测试中得以保持,表明该程序具有可转移性。报告了对密度泛函理论计算的初步扩展。