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层间水调节堆叠在石墨烯上的β-折叠蛋白质的生物纳米界面。

Interlayer water regulates the bio-nano interface of a β-sheet protein stacking on graphene.

作者信息

Lv Wenping, Xu Guiju, Zhang Hongyan, Li Xin, Liu Shengju, Niu Huan, Xu Dongsheng, Wu Ren'an

机构信息

CAS Key Laboratory of Separation Science for Analytical Chemistry, National Chromatographic R &A Center, Dalian Institute of Chemical Physics, Chinese Academy of Sciences (CAS), Dalian 116023, China.

Institute of Metal Research, Chinese Academy of Sciences, Shenyang 110016, China.

出版信息

Sci Rep. 2015 Jan 5;5:7572. doi: 10.1038/srep07572.

Abstract

Using molecular dynamics simulations, we investigated an integrated bio-nano interface consisting of a β-sheet protein stacked onto graphene. We found that the stacking assembly of the model protein on graphene could be controlled by water molecules. The interlayer water filled within interstices of the bio-nano interface could suppress the molecular vibration of surface groups on protein, and could impair the CH···π interaction driving the attraction of the protein and graphene. The intermolecular coupling of interlayer water would be relaxed by the relative motion of protein upon graphene due to the interaction between water and protein surface. This effect reduced the hindrance of the interlayer water against the assembly of protein on graphene, resulting an appropriate adsorption status of protein on graphene with a deep free energy trap. Thereby, the confinement and the relative sliding between protein and graphene, the coupling of protein and water, and the interaction between graphene and water all have involved in the modulation of behaviors of water molecules within the bio-nano interface, governing the hindrance of interlayer water against the protein assembly on hydrophobic graphene. These results provide a deep insight into the fundamental mechanism of protein adsorption onto graphene surface in water.

摘要

通过分子动力学模拟,我们研究了一种由堆叠在石墨烯上的β-折叠蛋白组成的集成生物-纳米界面。我们发现,模型蛋白在石墨烯上的堆叠组装可由水分子控制。填充在生物-纳米界面间隙中的层间水可抑制蛋白质表面基团的分子振动,并削弱驱动蛋白质与石墨烯相互吸引的CH···π相互作用。由于水与蛋白质表面之间的相互作用,蛋白质在石墨烯上的相对运动会使层间水的分子间耦合松弛。这种效应降低了层间水对蛋白质在石墨烯上组装的阻碍,导致蛋白质在石墨烯上具有适当的吸附状态,并形成一个深的自由能阱。因此,蛋白质与石墨烯之间的限制和相对滑动、蛋白质与水的耦合以及石墨烯与水之间的相互作用,都参与了生物-纳米界面内水分子行为的调节,决定了层间水对蛋白质在疏水石墨烯上组装的阻碍作用。这些结果为深入了解水中蛋白质吸附到石墨烯表面的基本机制提供了依据。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1747/4650828/ffd75bfbcb1f/srep07572-f1.jpg

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