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蛋白质变构研究中的全局ITC拟合方法。

Global ITC fitting methods in studies of protein allostery.

作者信息

Freiburger Lee, Auclair Karine, Mittermaier Anthony

机构信息

Technische Universität München, Chair of Biomolecular NMR Spectroscopy, Germany.

McGill University, Chemistry Department, Canada.

出版信息

Methods. 2015 Apr;76:149-161. doi: 10.1016/j.ymeth.2014.12.018. Epub 2015 Jan 5.

Abstract

Allostery is a nearly ubiquitous feature of biological systems in which ligand binding or covalent modification at one site alters the activities of distant sites in a macromolecule or macromolecular complex. The molecular mechanisms underlying this phenomenon have been studied for decades. Nevertheless there are many aspects that remain poorly understood. ITC yields detailed information on the thermodynamics of biomacromolecular interactions and their coupling to additional equilibria, therefore in principle it is a powerful tool for better understanding how allostery is achieved. A particularly powerful approach involves simultaneously fitting multiple ITC data sets together with those of complementary techniques, especially nuclear magnetic resonance and circular dichroism spectroscopies. In this review, we describe several group-fitting methods for discriminating between different binding models and for improving the accuracy of thermodynamic parameters extracted from variable-temperature ITC data. The techniques were applied to the antibiotic resistance-causing enzyme aminoglycoside-6'-acetyltransferase Ii, uncovering the existence of competition between opposing mechanisms and ligand-dependent switching of the underlying mechanism. These novel observations underline the potential of combining ITC and spectroscopic techniques to study allostery.

摘要

变构是生物系统中几乎普遍存在的一种特征,即在一个位点的配体结合或共价修饰会改变大分子或大分子复合物中远距离位点的活性。几十年来一直在研究这种现象背后的分子机制。然而,仍有许多方面了解甚少。等温滴定量热法(ITC)可提供有关生物大分子相互作用的热力学及其与其他平衡耦合的详细信息,因此原则上它是更好地理解变构如何实现的有力工具。一种特别有效的方法是将多个ITC数据集与互补技术(尤其是核磁共振和圆二色光谱)的数据集同时进行拟合。在本综述中,我们描述了几种分组拟合方法,用于区分不同的结合模型并提高从变温ITC数据中提取的热力学参数的准确性。这些技术被应用于导致抗生素耐药性的酶氨基糖苷-6'-乙酰基转移酶Ii,揭示了相反机制之间竞争的存在以及潜在机制的配体依赖性转换。这些新发现强调了结合ITC和光谱技术研究变构的潜力。

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