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甲基作为超分子结构、动力学和功能的探针。

Methyl groups as probes of supra-molecular structure, dynamics and function.

机构信息

Department of Molecular Genetics, The University of Toronto, ON, Canada.

出版信息

J Biomol NMR. 2010 Jan;46(1):75-87. doi: 10.1007/s10858-009-9376-1. Epub 2009 Sep 27.

DOI:10.1007/s10858-009-9376-1
PMID:19784810
Abstract

The development of new protein labeling strategies, along with optimized experiments that exploit the label, have significantly impacted on the types of biochemical problems that can now be addressed by solution NMR spectroscopy. Here we describe how methyl labeling of key residues in a highly deuterated protein background has facilitated studies of the structure, dynamics and interactions of supra-molecular particles. The methyl-labeling approach is briefly reviewed, followed by a summary of applications to three different molecular machines so as to illustrate the types of questions that can now be addressed. Areas where future innovations will lead to yet further improvements are highlighted as well.

摘要

新的蛋白质标记策略的发展,以及利用该标记优化实验,极大地影响了可以通过溶液 NMR 光谱学解决的生物化学问题的类型。在这里,我们描述了如何在高度氘化的蛋白质背景下对关键残基进行甲基标记,从而促进了对超分子颗粒的结构、动态和相互作用的研究。简要回顾了甲基标记方法,然后总结了三个不同分子机器的应用,以说明现在可以解决的问题类型。还强调了未来创新将带来进一步改进的领域。

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Three-dimensional triple-resonance NMR Spectroscopy of isotopically enriched proteins. 1990.同位素富集蛋白质的三维三共振核磁共振光谱学。1990年。
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Automated assignment in selectively methyl-labeled proteins.选择性甲基标记蛋白质中的自动分配
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Theory, practice, and applications of paramagnetic relaxation enhancement for the characterization of transient low-population states of biological macromolecules and their complexes.
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Analytical Framework to Understand the Origins of Methyl Side-Chain Dynamics in Protein Assemblies.分析框架,用于理解蛋白质组装体中甲硫侧链动力学的起源。
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Synthesis of C-methyl-labeled amino acids and their incorporation into proteins in mammalian cells.C-甲基标记氨基酸的合成及其在哺乳动物细胞中的蛋白质掺入。
Org Biomol Chem. 2023 Nov 29;21(46):9216-9229. doi: 10.1039/d3ob01320k.
9
Precision measurements of relaxation rates of degenerate H transitions in methyl groups of small proteins.精确测量小蛋白质中甲基简并 H 跃迁的弛豫率。
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10
Intrinsic structural dynamics dictate enzymatic activity and inhibition.内在结构动力学决定酶的活性和抑制。
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Chem Rev. 2009 Sep;109(9):4108-39. doi: 10.1021/cr900033p.
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Application of methyl-TROSY NMR to test allosteric models describing effects of nucleotide binding to aspartate transcarbamoylase.甲基-TROSY核磁共振技术在测试描述核苷酸与天冬氨酸转氨甲酰酶结合效应的变构模型中的应用。
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Toward an atomic model of the 26S proteasome.迈向26S蛋白酶体的原子模型。
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Fast two-dimensional NMR spectroscopy of high molecular weight protein assemblies.高分子量蛋白质聚集体的快速二维核磁共振光谱学
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Mechanism of gate opening in the 20S proteasome by the proteasomal ATPases.蛋白酶体ATP酶介导20S蛋白酶体门控开放的机制
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