嗜热栖热菌属菌株2.9的基因组序列草图，该菌株从阿根廷萨尔塔的一个温泉中分离得到。
Draft Genome Sequence of Thermus sp. Isolate 2.9, Obtained from a Hot Water Spring Located in Salta, Argentina.
作者信息
Navas Laura E, Berretta Marcelo F, Ortiz Elio M, Benintende Graciela B, Amadio Ariel F, Zandomeni Rubén O
机构信息
Instituto de Microbiología y Zoología Agrícola, Instituto Nacional de Tecnología Agropecuaria (INTA), Castelar, Buenos Aires, Argentina.
出版信息
Genome Announc. 2015 Jan 15;3(1):e01414-14. doi: 10.1128/genomeA.01414-14.
Abstract
Thermus sp. isolate 2.9 was obtained from a hot water spring in Salta, Argentina. Here, we report the draft genome sequence (2,485,434 bp) of this isolate, which consists of 11 scaffolds of >10 kbp and 2,719 protein-coding sequences.
摘要
嗜热栖热菌菌株2.9分离自阿根廷萨尔塔的一个温泉。在此，我们报告该菌株的基因组草图序列（2,485,434 bp），其由11个大于10 kbp的支架和2,719个蛋白质编码序列组成。
相似文献
1
Draft Genome Sequence of Thermus sp. Isolate 2.9, Obtained from a Hot Water Spring Located in Salta, Argentina.嗜热栖热菌属菌株2.9的基因组序列草图，该菌株从阿根廷萨尔塔的一个温泉中分离得到。
Genome Announc. 2015 Jan 15;3(1):e01414-14. doi: 10.1128/genomeA.01414-14.
2
Draft Genome Sequence of Geobacillus sp. Isolate T6, a Thermophilic Bacterium Collected from a Thermal Spring in Argentina.嗜热芽孢杆菌属菌株T6的基因组序列草图，该菌株是从阿根廷一处温泉中分离得到的嗜热细菌。
Genome Announc. 2015 Jul 16;3(4):e00743-15. doi: 10.1128/genomeA.00743-15.
3
Draft genome sequence of Thermus sp. strain RL, isolated from a hot water spring located atop the Himalayan ranges at Manikaran, India.Thermus sp. 菌株 RL 的基因组草图，该菌株从印度喜马拉雅山脉马尼克拉山顶的温泉中分离得到。
J Bacteriol. 2012 Jul;194(13):3534. doi: 10.1128/JB.00604-12.
4
Complete genome sequence of the thermophilic Thermus sp. CCB_US3_UF1 from a hot spring in Malaysia.来自马来西亚一处温泉的嗜热栖热菌属菌株CCB_US3_UF1的全基因组序列
Stand Genomic Sci. 2015 Oct 8;10:76. doi: 10.1186/s40793-015-0053-6. eCollection 2015.
5
High-quality draft genome sequence of the Thermus amyloliquefaciens type strain YIM 77409(T) with an incomplete denitrification pathway.具有不完全反硝化途径的解淀粉嗜热栖热菌模式菌株YIM 77409(T)的高质量基因组草图序列
Stand Genomic Sci. 2016 Feb 27;11:20. doi: 10.1186/s40793-016-0140-3. eCollection 2016.
6
Thermus parvatiensis RL(T) sp. nov., Isolated from a Hot Water Spring, Located Atop the Himalayan Ranges at Manikaran, India.帕尔瓦蒂温泉栖热菌RL(T)新种，从位于印度马尼卡兰喜马拉雅山脉之巅的一处温泉中分离得到。
Indian J Microbiol. 2015 Dec;55(4):357-365. doi: 10.1007/s12088-015-0538-4. Epub 2015 Jun 14.
7
Draft Genome Sequence of Deinococcus sp. Strain RL Isolated from Sediments of a Hot Water Spring.从温泉沉积物中分离出的嗜热栖热放线菌属菌株RL的基因组序列草图
Genome Announc. 2014 Jul 17;2(4):e00703-14. doi: 10.1128/genomeA.00703-14.
8
Description of five novel thermophilic species of the genus Thermus: Thermus hydrothermalis sp. nov., Thermus neutrinimicus sp. nov., Thermus thalpophilus sp. nov., Thermus albus sp. nov., and Thermus altitudinis sp. nov., isolated from hot spring sediments.描述五个新的嗜热物种的属Thermus ：Thermus 热水生菌属。nov.，Thermus 中温菌属。nov.，Thermus 嗜热菌属。nov.，Thermus 白色菌属。nov.，和Thermus 高海拔菌属。nov.，从温泉沉积物中分离出来。
Syst Appl Microbiol. 2022 Nov;45(6):126361. doi: 10.1016/j.syapm.2022.126361. Epub 2022 Sep 19.
9
Complete Genome Sequence of Paenibacillus strain Y4.12MC10, a Novel Paenibacillus lautus strain Isolated from Obsidian Hot Spring in Yellowstone National Park.从黄石国家公园黑曜石温泉中分离出的新型劳氏类芽孢杆菌Y4.12MC10菌株的全基因组序列
Stand Genomic Sci. 2012 Jul 30;6(3):381-400. doi: 10.4056/sigs.2605792. Epub 2012 Jul 27.
10
Draft Genome Sequence of Cellulolytic and Xylanolytic Paenibacillus sp. A59, Isolated from Decaying Forest Soil from Patagonia, Argentina.从阿根廷巴塔哥尼亚腐烂森林土壤中分离出的纤维素分解和木聚糖分解类芽孢杆菌A59的基因组序列草图
Genome Announc. 2015 Oct 22;3(5):e01233-15. doi: 10.1128/genomeA.01233-15.
引用本文的文献
1
Isolation and Characterization of Strain ET-1: An Extremely Thermophilic Bacterium with Extracellular Thermostable Proteolytic Activity Isolated from El Tatio Geothermal Field, Antofagasta, Chile.从智利安托法加斯塔的埃尔泰蒂奥地热田中分离到一株极端嗜热的产胞外热稳定蛋白酶的细菌 ET-1 及其特性。
Int J Mol Sci. 2023 Sep 25;24(19):14512. doi: 10.3390/ijms241914512.
2
A thermostable laccase from Thermus sp. 2.9 and its potential for delignification of Eucalyptus biomass.来自嗜热栖热菌属2.9的一种耐热漆酶及其对桉木生物质脱木质素的潜力。
AMB Express. 2019 Feb 12;9(1):24. doi: 10.1186/s13568-019-0748-y.
3
Complete Genome Sequence of Thermus aquaticus Y51MC23.嗜热水生栖热菌Y51MC23的全基因组序列
PLoS One. 2015 Oct 14;10(10):e0138674. doi: 10.1371/journal.pone.0138674. eCollection 2015.
本文引用的文献
1
Toward almost closed genomes with GapFiller.使用 GapFiller 实现近乎闭合的基因组。
Genome Biol. 2012 Jun 25;13(6):R56. doi: 10.1186/gb-2012-13-6-r56.
2
Scaffolding pre-assembled contigs using SSPACE.使用 SSPACE 搭建预组装 contigs 的支架。
Bioinformatics. 2011 Feb 15;27(4):578-9. doi: 10.1093/bioinformatics/btq683. Epub 2010 Dec 12.
3
Sequencing technologies - the next generation.测序技术——下一代。
Nat Rev Genet. 2010 Jan;11(1):31-46. doi: 10.1038/nrg2626. Epub 2009 Dec 8.
4
The RAST Server: rapid annotations using subsystems technology.RAST服务器：使用子系统技术进行快速注释。
BMC Genomics. 2008 Feb 8;9:75. doi: 10.1186/1471-2164-9-75.
5
RNAmmer: consistent and rapid annotation of ribosomal RNA genes.RNAmmer：核糖体RNA基因的一致性快速注释
Nucleic Acids Res. 2007;35(9):3100-8. doi: 10.1093/nar/gkm160. Epub 2007 Apr 22.
6
Mauve: multiple alignment of conserved genomic sequence with rearrangements.Mauve：带重排的保守基因组序列多重比对。
Genome Res. 2004 Jul;14(7):1394-403. doi: 10.1101/gr.2289704.
7
tRNAscan-SE: a program for improved detection of transfer RNA genes in genomic sequence.tRNAscan-SE：用于改进基因组序列中转运RNA基因检测的程序。
Nucleic Acids Res. 1997 Mar 1;25(5):955-64. doi: 10.1093/nar/25.5.955.
Zotero 插件