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热带血清杆菌新种,一种从红树林根际分离出的放线菌,以及血清杆菌属的修订描述

Serinibacter tropicus sp. nov., an actinobacterium isolated from the rhizosphere of a mangrove, and emended description of the genus Serinibacter.

作者信息

Hamada Moriyuki, Shibata Chiyo, Nurkanto Arif, Ratnakomala Shanti, Lisdiyanti Puspita, Tamura Tomohiko, Suzuki Ken-Ichiro

机构信息

Biological Resource Center, National Institute of Technology and Evaluation (NBRC), 2-5-8 Kazusakamatari, Kisarazu, Chiba 292-0818, Japan.

Indonesian Institute of Sciences (LIPI), Jl, Raya Jakarta-Bogor Km. 46, Cibinong 16911, Indonesia.

出版信息

Int J Syst Evol Microbiol. 2015 Apr;65(Pt 4):1151-1154. doi: 10.1099/ijs.0.000068. Epub 2015 Jan 20.

Abstract

A novel Gram-stain-positive actinobacterium, designated PS-14-7(T), was isolated from the rhizosphere of a mangrove on Pramuka Island, Indonesia, and its taxonomic position was investigated using a polyphasic approach. The peptidoglycan type of strain PS-14-7(T) was A4α and lysine was the diagnostic diamino acid of the peptidoglycan. The predominant menaquinone was MK-8(H4) and the major fatty acids were anteiso-C(15 : 0), C(16 : 0) and iso-C(16 : 0). The DNA G+C content was 72.8 mol%. Phylogenetic analysis based on 16S rRNA gene sequence comparisons revealed that strain PS-14-7(T) was closely related to Serinibacter salmoneus Kis4-28(T) (99.6%). However, DNA-DNA hybridization and phenotypic characteristics revealed that strain PS-14-7(T) differed from Serinibacter salmoneus . Therefore, strain PS-14-7(T) represents a novel species of the genus Serinibacter , for which the name Serinibacter tropicus sp. nov. is proposed. The type strain is PS-14-7(T) ( = NBRC 110108(T) = InaCC A 515(T)). An emended description of the genus Serinibacter is also proposed.

摘要

从印度尼西亚普拉穆卡岛红树林根际分离出一株新型革兰氏阳性放线菌,命名为PS-14-7(T),并采用多相分类法研究其分类地位。菌株PS-14-7(T)的肽聚糖类型为A4α,赖氨酸是肽聚糖的诊断性二氨基酸。主要甲基萘醌为MK-8(H4),主要脂肪酸为anteiso-C(15:0)、C(16:0)和iso-C(16:0)。DNA G+C含量为72.8 mol%。基于16S rRNA基因序列比较的系统发育分析表明,菌株PS-14-7(T)与鲑色丝杆菌Kis4-28(T)密切相关(99.6%)。然而,DNA-DNA杂交和表型特征表明,菌株PS-14-7(T)与鲑色丝杆菌不同。因此,菌株PS-14-7(T)代表丝杆菌属的一个新物种,为此提出名为热带丝杆菌(Serinibacter tropicus sp. nov.)。模式菌株为PS-14-7(T)(=NBRC 110108(T)=InaCC A 515(T))。还提出了丝杆菌属的修订描述。

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