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基于二唑的具有螺旋氢键网络的粉末共晶体:通过粉末X射线衍射、固态核磁共振和计算机建模确定结构

Diazole-based powdered cocrystal featuring a helical hydrogen-bonded network: structure determination from PXRD, solid-state NMR and computer modeling.

作者信息

Sardo Mariana, Santos Sérgio M, Babaryk Artem A, López Concepción, Alkorta Ibon, Elguero José, Claramunt Rosa M, Mafra Luís

机构信息

Department of Chemistry, CICECO, University of Aveiro, 3810-193 Aveiro, Portugal.

Department of Chemistry, CICECO, University of Aveiro, 3810-193 Aveiro, Portugal; Faculty of Chemistry, Taras Shevchenko National University of Kyiv, Volodymyrska s. 64/13, 01601 Kyiv, Ukraine.

出版信息

Solid State Nucl Magn Reson. 2015 Feb;65:49-63. doi: 10.1016/j.ssnmr.2014.12.005. Epub 2014 Dec 30.

Abstract

We present the structure of a new equimolar 1:1 cocrystal formed by 3,5-dimethyl-1H-pyrazole (dmpz) and 4,5-dimethyl-1H-imidazole (dmim), determined by means of powder X-ray diffraction data combined with solid-state NMR that provided insight into topological details of hydrogen bonding connectivities and weak interactions such as CH···π contacts. The use of various 1D/2D (13)C, (15)N and (1)H high-resolution solid-state NMR techniques provided structural insight on local length scales revealing internuclear proximities and relative orientations between the dmim and dmpz molecular building blocks of the studied cocrystal. Molecular modeling and DFT calculations were also employed to generate meaningful structures. DFT refinement was able to decrease the figure of merit R(F(2)) from ~11% (PXRD only) to 5.4%. An attempt was made to rationalize the role of NH···N and CH···π contacts in stabilizing the reported cocrystal. For this purpose four imidazole derivatives with distinct placement of methyl substituents were reacted with dmpz to understand the effect of methylation in blocking or enabling certain intermolecular contacts. Only one imidazole derivative (dmim) was able to incorporate into the dmpz trimeric motif thus resulting in a cocrystal, which contains both hydrophobic (methyl groups) and hydrophilic components that self-assemble to form an atypical 1D network of helicoidal hydrogen bonded pattern, featuring structural similarities with alpha-helix arrangements in proteins. The 1:1 dmpz···dmim compound I is the first example of a cocrystal formed by two different azoles.

摘要

我们展示了由3,5 - 二甲基 - 1H - 吡唑(dmpz)和4,5 - 二甲基 - 1H - 咪唑(dmim)形成的一种新的等摩尔1:1共晶体的结构,该结构通过粉末X射线衍射数据结合固态核磁共振确定,这为氢键连接性的拓扑细节以及诸如CH···π接触等弱相互作用提供了深入了解。使用各种一维/二维(¹³C、¹⁵N和¹H)高分辨率固态核磁共振技术,在局部长度尺度上提供了结构见解,揭示了所研究共晶体中dmim和dmpz分子结构单元之间的核间距离和相对取向。还采用了分子建模和密度泛函理论(DFT)计算来生成有意义的结构。DFT精修能够将品质因数R(F₂)从约11%(仅粉末X射线衍射)降低到5.4%。我们试图阐明NH···N和CH···π接触在稳定所报道共晶体中的作用。为此,使四种具有不同甲基取代基位置的咪唑衍生物与dmpz反应,以了解甲基化对阻断或促成某些分子间接触的影响。只有一种咪唑衍生物(dmim)能够并入dmpz三聚体基序,从而形成一种共晶体,该共晶体包含疏水(甲基基团)和亲水成分,它们自组装形成一种非典型的一维螺旋氢键模式网络,与蛋白质中的α - 螺旋排列具有结构相似性。1:1的dmpz···dmim化合物I是由两种不同唑类形成的共晶体的首个实例。

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