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在没有单晶的情况下测定复杂晶体结构:通过固态核磁共振和周期性密度泛函理论计算指导,对粉末X射线衍射数据进行分析,揭示了一种新的2'-脱氧鸟苷结构基序。

Determination of a complex crystal structure in the absence of single crystals: analysis of powder X-ray diffraction data, guided by solid-state NMR and periodic DFT calculations, reveals a new 2'-deoxyguanosine structural motif.

作者信息

Hughes Colan E, Reddy G N Manjunatha, Masiero Stefano, Brown Steven P, Williams P Andrew, Harris Kenneth D M

机构信息

School of Chemistry , Cardiff University , Park Place , Cardiff , CF10 3AT , UK . Email:

Department of Physics , University of Warwick , Coventry , CV4 7AL , UK.

出版信息

Chem Sci. 2017 May 1;8(5):3971-3979. doi: 10.1039/c7sc00587c. Epub 2017 Mar 16.

Abstract

Derivatives of guanine exhibit diverse supramolecular chemistry, with a variety of distinct hydrogen-bonding motifs reported in the solid state, including ribbons and quartets, which resemble the G-quadruplex found in nucleic acids with sequences rich in guanine. Reflecting this diversity, the solid-state structural properties of 3',5'-bis--decanoyl-2'-deoxyguanosine, reported in this paper, reveal a hydrogen-bonded guanine ribbon motif that has not been observed previously for 2'-deoxyguanosine derivatives. In this case, structure determination was carried out directly from powder XRD data, representing one of the most challenging organic molecular structures (a 90-atom molecule) that has been solved to date by this technique. While specific challenges were encountered in the structure determination process, a successful outcome was achieved by augmenting the powder XRD analysis with information derived from solid-state NMR data and with dispersion-corrected periodic DFT calculations for structure optimization. The synergy of experimental and computational methodologies demonstrated in the present work is likely to be an essential feature of strategies to further expand the application of powder XRD as a technique for structure determination of organic molecular materials of even greater complexity in the future.

摘要

鸟嘌呤衍生物展现出多样的超分子化学性质,在固态中报道了多种不同的氢键模式,包括带状结构和四重体,它们类似于在富含鸟嘌呤序列的核酸中发现的G-四链体。反映出这种多样性,本文报道的3',5'-双癸酰基-2'-脱氧鸟苷的固态结构性质揭示了一种氢键连接的鸟嘌呤带状结构模式,这在以前的2'-脱氧鸟苷衍生物中未曾观察到。在这种情况下,结构测定直接从粉末XRD数据进行,代表了迄今为止通过该技术解析的最具挑战性的有机分子结构之一(一个90原子的分子)。虽然在结构测定过程中遇到了特定的挑战,但通过用固态NMR数据获得的信息以及用于结构优化的色散校正周期性DFT计算增强粉末XRD分析,取得了成功的结果。本工作中展示的实验和计算方法的协同作用可能是未来进一步扩大粉末XRD作为一种用于测定甚至更复杂有机分子材料结构的技术的应用策略的一个基本特征。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/14cb/5433513/34c2ce8d11e5/c7sc00587c-f1.jpg

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