Duan Da, Doak Allison K, Nedyalkova Lyudmila, Shoichet Brian K
†Department of Pharmaceutical Chemistry, University of California, San Francisco, 1700 Fourth Street, San Francisco, California 94158-2550, United States.
‡Leslie Dan Faculty of Pharmacy, Donnelly Center, University of Toronto, 144 College Street, Toronto, Ontario M5S3M2, Canada.
ACS Chem Biol. 2015 Apr 17;10(4):978-88. doi: 10.1021/cb5009487. Epub 2015 Feb 9.
Traditional Chinese Medicines (TCMs) have been the sole source of therapeutics in China for two millennia. In recent drug discovery efforts, purified components of TCM formulations have shown activity in many in vitro assays, raising concerns of promiscuity. Here, we investigated 14 bioactive small molecules isolated from TCMs for colloidal aggregation. At concentrations commonly used in cell-based or biochemical assay conditions, eight of these compounds formed particles detectable by dynamic light scattering and showed detergent-reversible inhibition against β-lactamase and malate dehydrogenase, two counter-screening enzymes. When three of these compounds were tested against their literature-reported molecular targets, they showed similar reversal of their inhibitory activity in the presence of detergent. For three of the most potent aggregators, contributions to promiscuity via oxidative cycling were investigated; addition of 1 mM DTT had no effect on their activity, which is inconsistent with an oxidative mechanism. TCMs are often active at micromolar concentrations; this study suggests that care must be taken to control for artifactual activity when seeking their primary targets. Implications for the formulation of these molecules are considered.
两千年来,中药一直是中国唯一的治疗药物来源。在最近的药物研发工作中,中药配方的纯化成分在许多体外试验中显示出活性,这引发了对其混杂性的担忧。在此,我们研究了从中药中分离出的14种生物活性小分子的胶体聚集情况。在基于细胞或生化试验条件下常用的浓度下,其中8种化合物形成了可通过动态光散射检测到的颗粒,并对两种反筛选酶β-内酰胺酶和苹果酸脱氢酶表现出洗涤剂可逆抑制作用。当测试其中3种化合物针对文献报道的分子靶点时,它们在洗涤剂存在下显示出类似的抑制活性逆转。对于3种最有效的聚集剂,研究了通过氧化循环对混杂性的贡献;添加1 mM二硫苏糖醇对其活性没有影响,这与氧化机制不一致。中药通常在微摩尔浓度下具有活性;这项研究表明,在寻找其主要靶点时,必须注意控制人为活性。同时考虑了这些分子配方的影响。