• 文献检索
  • 文档翻译
  • 深度研究
  • 学术资讯
  • Suppr Zotero 插件Zotero 插件
  • 邀请有礼
  • 套餐&价格
  • 历史记录
应用&插件
Suppr Zotero 插件Zotero 插件浏览器插件Mac 客户端Windows 客户端微信小程序
定价
高级版会员购买积分包购买API积分包
服务
文献检索文档翻译深度研究API 文档MCP 服务
关于我们
关于 Suppr公司介绍联系我们用户协议隐私条款
关注我们

Suppr 超能文献

核心技术专利:CN118964589B侵权必究
粤ICP备2023148730 号-1Suppr @ 2026

文献检索

告别复杂PubMed语法,用中文像聊天一样搜索,搜遍4000万医学文献。AI智能推荐,让科研检索更轻松。

立即免费搜索

文件翻译

保留排版,准确专业,支持PDF/Word/PPT等文件格式,支持 12+语言互译。

免费翻译文档

深度研究

AI帮你快速写综述,25分钟生成高质量综述,智能提取关键信息,辅助科研写作。

立即免费体验

唐菖蒲伯克霍尔德氏菌菌株UCD-UG_CHAPALOTE(变形菌门)的基因组序列草图

Draft Genome Sequence of Burkholderia gladioli Strain UCD-UG_CHAPALOTE (Phylum Proteobacteria).

作者信息

Ettinger Cassandra L, Shehata Hanan R, Johnston-Monje David, Raizada Manish N, Eisen Jonathan A

机构信息

Genome Center, University of California Davis, Davis, California, USA.

Department of Plant Agriculture, University of Guelph, Guelph, Ontario, Canada.

出版信息

Genome Announc. 2015 Jan 22;3(1):e01462-14. doi: 10.1128/genomeA.01462-14.

DOI:10.1128/genomeA.01462-14
PMID:25614570
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC4319580/
Abstract

Here, we present the draft genome of Burkholderia gladioli strain UCD-UG_CHAPALOTE. This strain is an endophyte isolated from surface sterilized seeds of an ancient Mexican landrace of corn, Chapalote. The genome contains 8,527,129 bp in 109 scaffolds.

摘要

在此,我们展示了唐菖蒲伯克霍尔德氏菌菌株UCD - UG_CHAPALOTE的基因组草图。该菌株是从墨西哥古老玉米地方品种查帕洛特经表面消毒的种子中分离出的内生菌。基因组由109个支架组成,包含8,527,129个碱基对。

相似文献

1
Draft Genome Sequence of Burkholderia gladioli Strain UCD-UG_CHAPALOTE (Phylum Proteobacteria).唐菖蒲伯克霍尔德氏菌菌株UCD-UG_CHAPALOTE(变形菌门)的基因组序列草图
Genome Announc. 2015 Jan 22;3(1):e01462-14. doi: 10.1128/genomeA.01462-14.
2
Draft Genome Sequence of Enterobacter sp. Strain UCD-UG_FMILLET (Phylum Proteobacteria).肠杆菌属菌株UCD-UG_FMILLET(变形菌门)的基因组序列草图
Genome Announc. 2015 Jan 22;3(1):e01461-14. doi: 10.1128/genomeA.01461-14.
3
A Burkholderia endophyte of the ancient maize landrace Chapalote utilizes c-di-GMP-dependent and independent signaling to suppress diverse plant fungal pathogen targets.古老玉米地方品种查帕洛特的一种伯克霍尔德氏菌内生菌利用环二鸟苷单磷酸(c-di-GMP)依赖性和非依赖性信号传导来抑制多种植物真菌病原体靶点。
FEMS Microbiol Lett. 2017 Aug 1;364(14). doi: 10.1093/femsle/fnx138.
4
Genes Required for the Anti-fungal Activity of a Bacterial Endophyte Isolated from a Corn Landrace Grown Continuously by Subsistence Farmers Since 1000 BC.自公元前1000年以来由自给农民持续种植的玉米地方品种中分离出的一种细菌内生菌抗真菌活性所需的基因。
Front Microbiol. 2016 Oct 4;7:1548. doi: 10.3389/fmicb.2016.01548. eCollection 2016.
5
Draft Genome Sequence of Tatumella sp. Strain UCD-D_suzukii (Phylum Proteobacteria) Isolated from Drosophila suzukii Larvae.从铃木果蝇幼虫中分离出的塔特姆氏菌属菌株UCD-D_suzukii(变形菌门)的基因组序列草图
Genome Announc. 2014 Apr 24;2(2):e00349-14. doi: 10.1128/genomeA.00349-14.
6
Draft Genome Sequence of Broad-Spectrum Antifungal Bacterium Burkholderia gladioli Strain NGJ1, Isolated from Healthy Rice Seeds.从健康水稻种子中分离的广谱抗真菌细菌唐菖蒲伯克霍尔德氏菌菌株NGJ1的基因组序列草图
Genome Announc. 2015 Jul 23;3(4):e00803-15. doi: 10.1128/genomeA.00803-15.
7
Draft Genome Sequence of Microbacterium sp. Strain UCD-TDU (Phylum Actinobacteria).微小杆菌属菌株UCD - TDU(放线菌门)的基因组序列草图
Genome Announc. 2013 Mar 21;1(2):e0012013. doi: 10.1128/genomeA.00120-13.
8
Draft Genome Sequence of Leucobacter sp. Strain UCD-THU (Phylum Actinobacteria).勒克氏菌属菌株UCD - THU(放线菌门)的基因组序列草图
Genome Announc. 2013 Jun 27;1(3):e00325-13. doi: 10.1128/genomeA.00325-13.
9
Draft Genome Sequence of Kocuria sp. Strain UCD-OTCP (Phylum Actinobacteria).科氏菌属菌株UCD-OTCP(放线菌门)的基因组序列草图
Genome Announc. 2013 May 9;1(3):e00172-13. doi: 10.1128/genomeA.00172-13.
10
Draft Genome Sequence of sp. Strain EKM601B (Phylum ), Living inside the Seeds of (Chinese Okra).sp. 菌株EKM601B(门)的基因组序列草图,该菌株寄生于黄葵(中国秋葵)种子内。
Microbiol Resour Announc. 2020 May 14;9(20):e00180-20. doi: 10.1128/MRA.00180-20.

引用本文的文献

1
Complete Genome Sequence of Burkholderia gladioli Phage Maja.唐菖蒲伯克霍尔德菌噬菌体玛娅的全基因组序列
Microbiol Resour Announc. 2021 Feb 4;10(5):e01430-20. doi: 10.1128/MRA.01430-20.
2
CGB10: A Novel Strain Biocontrolling the Sugarcane Smut Disease.CGB10:一种防治甘蔗黑穗病的新型菌株
Microorganisms. 2020 Dec 7;8(12):1943. doi: 10.3390/microorganisms8121943.
3
Genes Required for the Anti-fungal Activity of a Bacterial Endophyte Isolated from a Corn Landrace Grown Continuously by Subsistence Farmers Since 1000 BC.自公元前1000年以来由自给农民持续种植的玉米地方品种中分离出的一种细菌内生菌抗真菌活性所需的基因。
Front Microbiol. 2016 Oct 4;7:1548. doi: 10.3389/fmicb.2016.01548. eCollection 2016.
4
Members of the genus Burkholderia: good and bad guys.伯克霍尔德菌属的成员:好坏参半。
F1000Res. 2016 May 26;5. doi: 10.12688/f1000research.8221.1. eCollection 2016.

本文引用的文献

1
Swabs to genomes: a comprehensive workflow.从拭子到基因组:一个全面的工作流程。
PeerJ. 2015 May 14;3:e960. doi: 10.7717/peerj.960. eCollection 2015.
2
PhyloSift: phylogenetic analysis of genomes and metagenomes.PhyloSift:基因组和宏基因组的系统发育分析。
PeerJ. 2014 Jan 9;2:e243. doi: 10.7717/peerj.243. eCollection 2014.
3
Ribosomal Database Project: data and tools for high throughput rRNA analysis.核糖体数据库项目:高通量 rRNA 分析的数据和工具。
Nucleic Acids Res. 2014 Jan;42(Database issue):D633-42. doi: 10.1093/nar/gkt1244. Epub 2013 Nov 27.
4
Systematic identification of gene families for use as "markers" for phylogenetic and phylogeny-driven ecological studies of bacteria and archaea and their major subgroups.系统地鉴定基因家族,作为细菌和古菌及其主要亚群的系统发育和系统发育驱动的生态学研究的“标记”。
PLoS One. 2013 Oct 17;8(10):e77033. doi: 10.1371/journal.pone.0077033. eCollection 2013.
5
An integrated pipeline for de novo assembly of microbial genomes.用于从头组装微生物基因组的集成管道。
PLoS One. 2012;7(9):e42304. doi: 10.1371/journal.pone.0042304. Epub 2012 Sep 13.
6
Conservation and diversity of seed associated endophytes in Zea across boundaries of evolution, ethnography and ecology.玉米属种子内生菌的保护和多样性:跨越进化、民族志和生态学的边界。
PLoS One. 2011;6(6):e20396. doi: 10.1371/journal.pone.0020396. Epub 2011 Jun 3.
7
FastTree 2--approximately maximum-likelihood trees for large alignments.FastTree 2--用于大型比对的近似最大似然树。
PLoS One. 2010 Mar 10;5(3):e9490. doi: 10.1371/journal.pone.0009490.
8
The RAST Server: rapid annotations using subsystems technology.RAST服务器:使用子系统技术进行快速注释。
BMC Genomics. 2008 Feb 8;9:75. doi: 10.1186/1471-2164-9-75.
9
Diversity and significance of Burkholderia species occupying diverse ecological niches.占据不同生态位的伯克霍尔德菌属的多样性及重要性。
Environ Microbiol. 2003 Sep;5(9):719-29. doi: 10.1046/j.1462-2920.2003.00471.x.
10
A N2-fixing endophytic Burkholderia sp. associated with maize plants cultivated in Mexico.一种与墨西哥种植的玉米植株相关的固氮内生伯克霍尔德氏菌属细菌。
Can J Microbiol. 2002 Apr;48(4):285-94. doi: 10.1139/w02-023.