a Cleveland Diagnostics , 3615 Superior Ave., Suite 4407B, Cleveland , OH 44114 , USA.
b Laboratory of Separation and Reaction Engineering, Department of Chemical Engineering , University of Porto , Dr. Roberto Frias St., 4200 465 Porto , Portugal.
J Biomol Struct Dyn. 2016;34(1):92-103. doi: 10.1080/07391102.2015.1011235. Epub 2015 Feb 26.
Analysis of the macromolecular crowding effects in polymer solutions show that the excluded volume effect is not the only factor affecting the behavior of biomolecules in a crowded environment. The observed inconsistencies are commonly explained by the so-called soft interactions, such as electrostatic, hydrophobic, and van der Waals interactions, between the crowding agent and the protein, in addition to the hard nonspecific steric interactions. We suggest that the changes in the solvent properties of aqueous media induced by the crowding agents may be the root of these "soft" interactions. To check this hypothesis, the solvatochromic comparison method was used to determine the solvent dipolarity/polarizability, hydrogen-bond donor acidity, and hydrogen-bond acceptor basicity of aqueous solutions of different polymers (dextran, poly(ethylene glycol), Ficoll, Ucon, and polyvinylpyrrolidone) with the polymer concentration up to 40% typically used as crowding agents. Polymer-induced changes in these features were found to be polymer type and concentration specific, and, in case of polyethylene glycol (PEG), molecular mass specific. Similarly sized polymers PEG and Ucon producing different changes in the solvent properties of water in their solutions induced morphologically different α-synuclein aggregates. It is shown that the crowding effects of some polymers on protein refolding and stability reported in the literature can be quantitatively described in terms of the established solvent features of the media in these polymers solutions. These results indicate that the crowding agents do induce changes in solvent properties of aqueous media in crowded environment. Therefore, these changes should be taken into account for crowding effect analysis.
聚合物溶液中大分子拥挤效应的分析表明,排除体积效应并不是影响生物分子在拥挤环境中行为的唯一因素。除了硬的非特异性空间相互作用外,观察到的不一致性通常可以用所谓的软相互作用来解释,如拥挤剂与蛋白质之间的静电、疏水和范德华相互作用。我们认为,拥挤剂诱导的水介质溶剂性质的变化可能是这些“软”相互作用的根源。为了验证这一假设,使用溶剂对比色法来确定不同聚合物(葡聚糖、聚乙二醇、Ficoll、Ucon 和聚乙烯吡咯烷酮)水溶液的溶剂偶极矩/极化率、氢键供体酸度和氢键接受体碱度,聚合物浓度高达 40%,通常用作拥挤剂。发现这些特征的聚合物诱导变化具有聚合物类型和浓度特异性,并且对于聚乙二醇(PEG),还具有分子量特异性。在其溶液中产生不同的溶剂性质变化的大小相似的聚合物 PEG 和 Ucon 诱导形态上不同的α-突触核蛋白聚集体。结果表明,文献中报道的一些聚合物对蛋白质重折叠和稳定性的拥挤效应可以根据这些聚合物溶液中介质的已建立溶剂特征进行定量描述。这些结果表明,拥挤剂确实会引起拥挤环境中水溶液溶剂性质的变化。因此,在拥挤效应分析中应考虑这些变化。