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环状RNA丰度与增殖的相关性——以结直肠癌、卵巢癌、特发性肺纤维化及正常人体组织为例

Correlation of circular RNA abundance with proliferation--exemplified with colorectal and ovarian cancer, idiopathic lung fibrosis, and normal human tissues.

作者信息

Bachmayr-Heyda Anna, Reiner Agnes T, Auer Katharina, Sukhbaatar Nyamdelger, Aust Stefanie, Bachleitner-Hofmann Thomas, Mesteri Ildiko, Grunt Thomas W, Zeillinger Robert, Pils Dietmar

机构信息

Department of Obstetrics and Gynaecology, Molecular Oncology Group, Comprehensive Cancer Centre, Medical University of Vienna &Ludwig Boltzmann Cluster Translational Oncology, Vienna, Austria.

Department of Surgery, Medical University of Vienna, Vienna, Austria.

出版信息

Sci Rep. 2015 Jan 27;5:8057. doi: 10.1038/srep08057.

Abstract

Circular RNAs are a recently (re-)discovered abundant RNA species with presumed function as miRNA sponges, thus part of the competing endogenous RNA network. We analysed the expression of circular and linear RNAs and proliferation in matched normal colon mucosa and tumour tissues. We predicted >1,800 circular RNAs and proved the existence of five randomly chosen examples using RT-qPCR. Interestingly, the ratio of circular to linear RNA isoforms was always lower in tumour compared to normal colon samples and even lower in colorectal cancer cell lines. Furthermore, this ratio correlated negatively with the proliferation index. The correlation of global circular RNA abundance (the circRNA index) and proliferation was validated in a non-cancerous proliferative disease, idiopathic pulmonary fibrosis, ovarian cancer cells compared to cultured normal ovarian epithelial cells, and 13 normal human tissues. We are the first to report a global reduction of circular RNA abundance in colorectal cancer cell lines and cancer compared to normal tissues and discovered a negative correlation of global circular RNA abundance and proliferation. This negative correlation seems to be a general principle in human tissues as validated with three different settings. Finally, we present a simple model how circular RNAs could accumulate in non-proliferating cells.

摘要

环状RNA是最近(重新)发现的一类丰富的RNA分子,被认为具有充当微小RNA(miRNA)海绵的功能,因此是竞争性内源性RNA网络的一部分。我们分析了环状和线性RNA的表达以及配对的正常结肠黏膜和肿瘤组织中的增殖情况。我们预测了1800多种环状RNA,并通过逆转录定量聚合酶链反应(RT-qPCR)证实了随机选择的5个实例的存在。有趣的是,与正常结肠样本相比,肿瘤中环状RNA与线性RNA异构体的比例始终较低,在结直肠癌细胞系中甚至更低。此外,该比例与增殖指数呈负相关。在一种非癌性增殖性疾病——特发性肺纤维化、卵巢癌细胞与培养的正常卵巢上皮细胞相比以及13种正常人体组织中,验证了整体环状RNA丰度(环状RNA指数)与增殖之间的相关性。我们首次报道了与正常组织相比,结直肠癌细胞系和癌症中环状RNA丰度整体降低,并发现整体环状RNA丰度与增殖呈负相关。正如在三种不同情况下所验证的那样,这种负相关似乎是人体组织中的一个普遍规律。最后,我们提出了一个简单的模型,说明环状RNA如何在非增殖细胞中积累。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f2e9/4306919/085561925d40/srep08057-f1.jpg

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