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中国水稻黑条矮缩病毒S9片段的系统发育和重组分析

Phylogenetic and recombination analysis of rice black-streaked dwarf virus segment 9 in China.

作者信息

Zhou Yu, Weng Jian-Feng, Chen Yan-Ping, Liu Chang-Lin, Han Xiao-Hua, Hao Zhuan-Fang, Li Ming-Shun, Yong Hong-Jun, Zhang De-Gui, Zhang Shi-Huang, Li Xin-Hai

机构信息

Institute of Crop Science, Chinese Academy of Agricultural Sciences, Zhongguancun South Street, Haidian District, Beijing, 100081, China.

出版信息

Arch Virol. 2015 Apr;160(4):1119-23. doi: 10.1007/s00705-014-2291-0. Epub 2015 Jan 30.

DOI:10.1007/s00705-014-2291-0
PMID:25633210
Abstract

Rice black-streaked dwarf virus (RBSDV) is an economically important virus that causes maize rough dwarf disease and rice black-streaked dwarf disease in East Asia. To study RBSDV variation and recombination, we examined the segment 9 (S9) sequences of 49 RBSDV isolates from maize and rice in China. Three S9 recombinants were detected in Baoding, Jinan, and Jining, China. Phylogenetic analysis showed that Chinese RBSDV isolates could be classified into two groups based on their S9 sequences, regardless of host or geographical origin. Further analysis suggested that S9 has undergone negative and purifying selection.

摘要

水稻黑条矮缩病毒(RBSDV)是一种具有重要经济影响的病毒,在东亚地区可导致玉米粗缩病和水稻黑条矮缩病。为研究RBSDV的变异和重组情况,我们检测了来自中国玉米和水稻的49个RBSDV分离株的第9节段(S9)序列。在中国保定、济南和济宁检测到3个S9重组体。系统发育分析表明,中国的RBSDV分离株根据其S9序列可分为两组,与宿主或地理来源无关。进一步分析表明,S9经历了负向和纯化选择。

相似文献

1
Phylogenetic and recombination analysis of rice black-streaked dwarf virus segment 9 in China.中国水稻黑条矮缩病毒S9片段的系统发育和重组分析
Arch Virol. 2015 Apr;160(4):1119-23. doi: 10.1007/s00705-014-2291-0. Epub 2015 Jan 30.
2
Genetic structure of rice black-streaked dwarf virus populations in China.中国水稻黑条矮缩病毒群体的遗传结构。
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A black-streaked dwarf disease on rice in China is caused by a novel fijivirus.中国水稻上一种有黑色条纹的矮缩病是由一种新型斐济病毒引起的。
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Rice black-streaked dwarf virus Genome in China: Diversification, Phylogeny, and Selection.中国水稻黑条矮缩病毒基因组:多样性、系统进化与选择。
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Phylogenetic analysis reveals that a dwarfing disease on different cereal crops in China is due to rice black streaked dwarf virus (RBSDV).系统发育分析表明,中国不同谷类作物上的一种矮缩病是由水稻黑条矮缩病毒(RBSDV)引起的。
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引用本文的文献

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Marker-assisted selection of to improve maize resistance to rough dwarf disease.利用标记辅助选择提高玉米对粗缩病的抗性。
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Rice black-streaked dwarf virus: From multiparty interactions among plant-virus-vector to intermittent epidemics.水稻黑条矮缩病毒:从植物-病毒-介体的多方相互作用到间歇性流行。
Mol Plant Pathol. 2020 Aug;21(8):1007-1019. doi: 10.1111/mpp.12946. Epub 2020 Jun 8.
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Molecular characteristics of segment 5, a unique fragment encoding two partially overlapping ORFs in the genome of rice black-streaked dwarf virus.
水稻黑条矮缩病毒基因组 5 节段的分子特征,该节段编码两个部分重叠的开放阅读框。
PLoS One. 2019 Nov 7;14(11):e0224569. doi: 10.1371/journal.pone.0224569. eCollection 2019.
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Close evolutionary relationship between rice black-streaked dwarf virus and southern rice black-streaked dwarf virus based on analysis of their bicistronic RNAs.基于双顺反子 RNA 分析推测水稻黑条矮缩病毒与南方水稻黑条矮缩病毒具有密切的进化关系。
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Molecular Genetic Analysis and Evolution of Segment 7 in Rice Black-Streaked Dwarf Virus in China.中国水稻黑条矮缩病毒S7片段的分子遗传分析与进化
PLoS One. 2015 Jun 29;10(6):e0131410. doi: 10.1371/journal.pone.0131410. eCollection 2015.