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Ubiquitous transcription factors display structural plasticity and diverse functions: NusG proteins - Shifting shapes and paradigms.普遍存在的转录因子表现出结构可塑性和多种功能:NusG蛋白——不断变化的形状和模式。
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Flipping states: a few key residues decide the winning conformation of the only universally conserved transcription factor.状态翻转:少数关键残基决定了唯一普遍保守的转录因子的优势构象。
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Structural Basis for Transcript Elongation Control by NusG Family Universal Regulators.NusG 家族通用调控因子转录延伸控制的结构基础。
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Structural and sequence comparisons arising from the solution structure of the transcription elongation factor NusG from Thermus thermophilus.嗜热栖热菌转录延伸因子NusG溶液结构产生的结构与序列比较
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In silico discovery of small molecules that inhibit RfaH recruitment to RNA polymerase.基于计算机的小分子抑制剂抑制 RfaH 招募到 RNA 聚合酶的发现。
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Reading of the non-template DNA by transcription elongation factors.转录延伸因子对非模板 DNA 的读取。
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本文引用的文献

1
Comparative overview of RNA polymerase II and III transcription cycles, with focus on RNA polymerase III termination and reinitiation.RNA聚合酶II和III转录周期的比较概述,重点关注RNA聚合酶III的终止和重新起始。
Transcription. 2014;5(1):e27639. doi: 10.4161/trns.27369.
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Coupling mRNA synthesis and decay.耦合信使核糖核酸的合成与降解
Mol Cell Biol. 2014 Nov 15;34(22):4078-87. doi: 10.1128/MCB.00535-14. Epub 2014 Aug 25.
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Conserved architecture of the core RNA polymerase II initiation complex.核心 RNA 聚合酶 II 起始复合物的保守结构。
Nat Commun. 2014 Jul 10;5:4310. doi: 10.1038/ncomms5310.
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Bacterial sigma factors: a historical, structural, and genomic perspective.细菌σ因子:历史、结构和基因组视角。
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How an mRNA capping enzyme reads distinct RNA polymerase II and Spt5 CTD phosphorylation codes.信使核糖核酸加帽酶如何识别不同的RNA聚合酶II和Spt5羧基末端结构域磷酸化编码。
Genes Dev. 2014 Jun 15;28(12):1323-36. doi: 10.1101/gad.242768.114.
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Interactions between RNA polymerase and the "core recognition element" counteract pausing.RNA聚合酶与“核心识别元件”之间的相互作用可抵消停顿。
Science. 2014 Jun 13;344(6189):1285-9. doi: 10.1126/science.1253458.
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The complex choreography of transcription-coupled repair.转录偶联修复的复杂编排。
DNA Repair (Amst). 2014 Jul;19:64-70. doi: 10.1016/j.dnarep.2014.03.025. Epub 2014 Apr 19.
8
NusG/Spt5: are there common functions of this ubiquitous transcription elongation factor?NusG/Spt5:这种普遍存在的转录延伸因子有共同功能吗?
Curr Opin Microbiol. 2014 Apr;18:68-71. doi: 10.1016/j.mib.2014.02.005. Epub 2014 Mar 12.
9
UvrD facilitates DNA repair by pulling RNA polymerase backwards.UvrD 通过将 RNA 聚合酶向后拉动来促进 DNA 修复。
Nature. 2014 Jan 16;505(7483):372-7. doi: 10.1038/nature12928. Epub 2014 Jan 8.
10
Interdomain contacts control folding of transcription factor RfaH.结构域间相互作用控制转录因子 RfaH 的折叠。
Nucleic Acids Res. 2013 Dec;41(22):10077-85. doi: 10.1093/nar/gkt779. Epub 2013 Aug 29.

普遍存在的转录因子表现出结构可塑性和多种功能:NusG蛋白——不断变化的形状和模式。

Ubiquitous transcription factors display structural plasticity and diverse functions: NusG proteins - Shifting shapes and paradigms.

作者信息

NandyMazumdar Monali, Artsimovitch Irina

机构信息

Department of Microbiology and The Center for RNA Biology, The Ohio State University, Columbus, OH, USA.

出版信息

Bioessays. 2015 Mar;37(3):324-34. doi: 10.1002/bies.201400177. Epub 2015 Jan 15.

DOI:10.1002/bies.201400177
PMID:25640595
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC4334689/
Abstract

Numerous accessory factors modulate RNA polymerase response to regulatory signals and cellular cues and establish communications with co-transcriptional RNA processing. Transcription regulators are astonishingly diverse, with similar mechanisms arising via convergent evolution. NusG/Spt5 elongation factors comprise the only universally conserved and ancient family of regulators. They bind to the conserved clamp helices domain of RNA polymerase, which also interacts with non-homologous initiation factors in all domains of life, and reach across the DNA channel to form processivity clamps that enable uninterrupted RNA chain synthesis. In addition to this ubiquitous function, NusG homologs exert diverse, and sometimes opposite, effects on gene expression by competing with each other and other regulators for binding to the clamp helices and by recruiting auxiliary factors that facilitate termination, antitermination, splicing, translation, etc. This surprisingly diverse range of activities and the underlying unprecedented structural changes make studies of these "transformer" proteins both challenging and rewarding.

摘要

众多辅助因子调节RNA聚合酶对调控信号和细胞信号的反应,并与共转录RNA加工建立联系。转录调节因子种类惊人地多样,相似的机制通过趋同进化产生。NusG/Spt5延伸因子是唯一普遍保守且古老的调节因子家族。它们与RNA聚合酶保守的钳螺旋结构域结合,该结构域在生命的所有领域中也与非同源起始因子相互作用,并穿过DNA通道形成持续性钳,从而实现不间断的RNA链合成。除了这种普遍存在的功能外,NusG同源物通过相互竞争以及与其他调节因子竞争结合钳螺旋,并通过招募促进终止、抗终止、剪接、翻译等的辅助因子,对基因表达产生多样的、有时甚至相反的影响。这些活动范围惊人的多样性以及潜在的前所未有的结构变化,使得对这些“变压器”蛋白的研究既具有挑战性又有意义。