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丝裂原活化蛋白激酶(MAPK)网络及其由于环面稳态而产生的多稳态能力。

MAPK's networks and their capacity for multistationarity due to toric steady states.

作者信息

Pérez Millán Mercedes, Turjanski Adrián G

机构信息

Dto. de Matemática, FCEN, Universidad de Buenos Aires, Ciudad Universitaria, Pab. I, C1428EGA Buenos Aires, Argentina; Dto. de Ciencias Exactas, CBC, Universidad de Buenos Aires, Ramos Mejía 841, C1405CAE Buenos Aires, Argentina.

Dto. de Química Biológica, FCEN, Universidad de Buenos Aires, Ciudad Universitaria, Pab. II, C1428EGA Buenos Aires, Argentina.

出版信息

Math Biosci. 2015 Apr;262:125-37. doi: 10.1016/j.mbs.2014.12.010. Epub 2015 Jan 30.

Abstract

Mitogen-activated protein kinase (MAPK) signaling pathways play an essential role in the transduction of environmental stimuli to the nucleus, thereby regulating a variety of cellular processes, including cell proliferation, differentiation and programmed cell death. The components of the MAPK extracellular activated protein kinase (ERK) cascade represent attractive targets for cancer therapy as their aberrant activation is a frequent event among highly prevalent human cancers. MAPK networks are a model for computational simulation, mostly using ordinary and partial differential equations. Key results showed that these networks can have switch-like behavior, bistability and oscillations. In this work, we consider three representative ERK networks, one with a negative feedback loop, which present a binomial steady state ideal under mass-action kinetics. We therefore apply the theoretical result present in to find a set of rate constants that allow two significantly different stable steady states in the same stoichiometric compatibility class for each network. Our approach makes it possible to study certain aspects of the system, such as multistationarity, without relying on simulation, since we do not assume a priori any constant but the topology of the network. As the performed analysis is general it could be applied to many other important biochemical networks.

摘要

丝裂原活化蛋白激酶(MAPK)信号通路在将环境刺激传导至细胞核的过程中发挥着至关重要的作用,从而调节包括细胞增殖、分化和程序性细胞死亡在内的多种细胞过程。MAPK细胞外活化蛋白激酶(ERK)级联反应的组成部分是癌症治疗的有吸引力的靶点,因为它们的异常激活在高度常见的人类癌症中是常见事件。MAPK网络是计算模拟的模型,主要使用常微分方程和偏微分方程。关键结果表明,这些网络可以具有开关样行为、双稳性和振荡。在这项工作中,我们考虑了三个具有代表性的ERK网络,其中一个带有负反馈回路,在质量作用动力学下呈现二项式稳态理想情况。因此,我们应用现有的理论结果来找到一组速率常数,使得每个网络在相同的化学计量相容性类中具有两个显著不同的稳定稳态。我们的方法使得在不依赖模拟的情况下研究系统的某些方面成为可能,比如多稳态,因为我们除了网络拓扑结构之外,不预先假定任何常数。由于所进行的分析具有普遍性,它可以应用于许多其他重要的生化网络。

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