• 文献检索
  • 文档翻译
  • 深度研究
  • 学术资讯
  • Suppr Zotero 插件Zotero 插件
  • 邀请有礼
  • 套餐&价格
  • 历史记录
应用&插件
Suppr Zotero 插件Zotero 插件浏览器插件Mac 客户端Windows 客户端微信小程序
定价
高级版会员购买积分包购买API积分包
服务
文献检索文档翻译深度研究API 文档MCP 服务
关于我们
关于 Suppr公司介绍联系我们用户协议隐私条款
关注我们

Suppr 超能文献

核心技术专利:CN118964589B侵权必究
粤ICP备2023148730 号-1Suppr @ 2026

文献检索

告别复杂PubMed语法,用中文像聊天一样搜索,搜遍4000万医学文献。AI智能推荐,让科研检索更轻松。

立即免费搜索

文件翻译

保留排版,准确专业,支持PDF/Word/PPT等文件格式,支持 12+语言互译。

免费翻译文档

深度研究

AI帮你快速写综述,25分钟生成高质量综述,智能提取关键信息,辅助科研写作。

立即免费体验

基于RNA测序的鸡雄性生殖细胞分化过程中脂质代谢途径调控机制的研究

Study on the regulatory mechanism of the lipid metabolism pathways during chicken male germ cell differentiation based on RNA-seq.

作者信息

Zuo Qisheng, Li Dong, Zhang Lei, Elsayed Ahmed Kamel, Lian Chao, Shi Qingqing, Zhang Zhentao, Zhu Rui, Wang Yinjie, Jin Kai, Zhang Yani, Li Bichun

机构信息

Key Laboratory of Animal Breeding Reproduction and Molecular Design for Jiangsu Province, College of Animal Science and Technology, Yangzhou University, Yangzhou, 225009, China.

Key Laboratory of Animal Breeding Reproduction and Molecular Design for Jiangsu Province, College of Animal Science and Technology, Yangzhou University, Yangzhou, 225009, China; College of Veterinary medicine, Suez Canal University, Ismailia, 41522, Egypt.

出版信息

PLoS One. 2015 Feb 6;10(2):e0109469. doi: 10.1371/journal.pone.0109469. eCollection 2015.

DOI:10.1371/journal.pone.0109469
PMID:25658587
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC4320113/
Abstract

Here, we explore the regulatory mechanism of lipid metabolic signaling pathways and related genes during differentiation of male germ cells in chickens, with the hope that better understanding of these pathways may improve in vitro induction. Fluorescence-activated cell sorting was used to obtain highly purified cultures of embryonic stem cells (ESCs), primitive germ cells (PGCs), and spermatogonial stem cells (SSCs). The total RNA was then extracted from each type of cell. High-throughput analysis methods (RNA-seq) were used to sequence the transcriptome of these cells. Gene Ontology (GO) analysis and the KEGG database were used to identify lipid metabolism pathways and related genes. Retinoic acid (RA), the end-product of the retinol metabolism pathway, induced in vitro differentiation of ESC into male germ cells. Quantitative real-time PCR (qRT-PCR) was used to detect changes in the expression of the genes involved in the retinol metabolic pathways. From the results of RNA-seq and the database analyses, we concluded that there are 328 genes in 27 lipid metabolic pathways continuously involved in lipid metabolism during the differentiation of ESC into SSC in vivo, including retinol metabolism. Alcohol dehydrogenase 5 (ADH5) and aldehyde dehydrogenase 1 family member A1 (ALDH1A1) are involved in RA synthesis in the cell. ADH5 was specifically expressed in PGC in our experiments and aldehyde dehydrogenase 1 family member A1 (ALDH1A1) persistently increased throughout development. CYP26b1, a member of the cytochrome P450 superfamily, is involved in the degradation of RA. Expression of CYP26b1, in contrast, decreased throughout development. Exogenous RA in the culture medium induced differentiation of ESC to SSC-like cells. The expression patterns of ADH5, ALDH1A1, and CYP26b1 were consistent with RNA-seq results. We conclude that the retinol metabolism pathway plays an important role in the process of chicken male germ cell differentiation.

摘要

在此,我们探究鸡雄性生殖细胞分化过程中脂质代谢信号通路及相关基因的调控机制,希望对这些通路的深入了解能够改善体外诱导效果。利用荧光激活细胞分选技术获得了高度纯化的胚胎干细胞(ESC)、原始生殖细胞(PGC)和精原干细胞(SSC)培养物。然后从每种细胞类型中提取总RNA。采用高通量分析方法(RNA测序)对这些细胞的转录组进行测序。利用基因本体论(GO)分析和KEGG数据库来鉴定脂质代谢途径及相关基因。视黄醇代谢途径的终产物视黄酸(RA)可诱导ESC体外分化为雄性生殖细胞。采用定量实时PCR(qRT-PCR)检测视黄醇代谢途径中相关基因表达的变化。根据RNA测序和数据库分析结果,我们得出结论,在ESC体内分化为SSC的过程中,27条脂质代谢途径中的328个基因持续参与脂质代谢,包括视黄醇代谢。乙醇脱氢酶5(ADH5)和醛脱氢酶1家族成员A1(ALDH1A1)参与细胞内RA的合成。在我们的实验中,ADH5在PGC中特异性表达,醛脱氢酶1家族成员A1(ALDH1A1)在整个发育过程中持续增加。细胞色素P450超家族成员CYP26b1参与RA的降解。相反,CYP26b1的表达在整个发育过程中下降。培养基中的外源性RA诱导ESC分化为类SSC细胞。ADH5、ALDH1A1和CYP26b1的表达模式与RNA测序结果一致。我们得出结论,视黄醇代谢途径在鸡雄性生殖细胞分化过程中起重要作用。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a5d8/4320113/f96d4d987f98/pone.0109469.g008.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a5d8/4320113/6229dc58c738/pone.0109469.g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a5d8/4320113/d548c7158af2/pone.0109469.g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a5d8/4320113/15a13aef96b0/pone.0109469.g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a5d8/4320113/4cd80df60f3f/pone.0109469.g004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a5d8/4320113/3bf44f852795/pone.0109469.g005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a5d8/4320113/c43a49dfdf00/pone.0109469.g006.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a5d8/4320113/0e72ffcde1a0/pone.0109469.g007.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a5d8/4320113/f96d4d987f98/pone.0109469.g008.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a5d8/4320113/6229dc58c738/pone.0109469.g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a5d8/4320113/d548c7158af2/pone.0109469.g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a5d8/4320113/15a13aef96b0/pone.0109469.g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a5d8/4320113/4cd80df60f3f/pone.0109469.g004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a5d8/4320113/3bf44f852795/pone.0109469.g005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a5d8/4320113/c43a49dfdf00/pone.0109469.g006.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a5d8/4320113/0e72ffcde1a0/pone.0109469.g007.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a5d8/4320113/f96d4d987f98/pone.0109469.g008.jpg

相似文献

1
Study on the regulatory mechanism of the lipid metabolism pathways during chicken male germ cell differentiation based on RNA-seq.基于RNA测序的鸡雄性生殖细胞分化过程中脂质代谢途径调控机制的研究
PLoS One. 2015 Feb 6;10(2):e0109469. doi: 10.1371/journal.pone.0109469. eCollection 2015.
2
CYP1A1 based on metabolism of xenobiotics by cytochrome P450 regulates chicken male germ cell differentiation.基于细胞色素P450对外源化合物代谢的CYP1A1调节鸡雄性生殖细胞分化。
In Vitro Cell Dev Biol Anim. 2017 Apr;53(4):293-303. doi: 10.1007/s11626-016-0108-z. Epub 2017 Mar 31.
3
Basing RNA-seq explored the regulatory mechanism of the carbohydrate metabolism pathways during chicken male germ cell differentiation.基于RNA测序技术探究鸡雄性生殖细胞分化过程中碳水化合物代谢途径的调控机制。
In Vitro Cell Dev Biol Anim. 2015 Aug;51(7):690-6. doi: 10.1007/s11626-015-9874-2. Epub 2015 Apr 1.
4
Retinoic acid promotes formation of chicken (Gallus gallus) spermatogonial stem cells by regulating the ECM-receptor interaction signaling pathway.维甲酸通过调节细胞外基质-受体相互作用信号通路促进鸡(Gallus gallus)精原干细胞的形成。
Gene. 2022 Apr 30;820:146227. doi: 10.1016/j.gene.2022.146227. Epub 2022 Feb 3.
5
Regulation of Hedgehog Signaling in Chicken Embryonic Stem Cells Differentiation Into Male Germ Cells (Gallus).鸡胚胎干细胞分化为雄性生殖细胞(原鸡)过程中刺猬信号通路的调控
J Cell Biochem. 2017 Jun;118(6):1379-1386. doi: 10.1002/jcb.25796. Epub 2016 Nov 30.
6
Regulation of crucial lncRNAs in differentiation of chicken embryonic stem cells to spermatogonia stem cells.鸡胚胎干细胞向精原干细胞分化过程中关键长链非编码RNA的调控
Anim Genet. 2017 Apr;48(2):191-204. doi: 10.1111/age.12510. Epub 2016 Nov 14.
7
Wnt signaling pathway regulates differentiation of chicken embryonic stem cells into spermatogonial stem cells via Wnt5a.Wnt 信号通路通过 Wnt5a 调控鸡胚胎干细胞向精原干细胞的分化。
J Cell Biochem. 2018 Feb;119(2):1689-1701. doi: 10.1002/jcb.26329. Epub 2017 Sep 25.
8
Regulatory mechanism of protein metabolic pathway during the differentiation process of chicken male germ cell.鸡雄性生殖细胞分化过程中蛋白质代谢途径的调控机制
In Vitro Cell Dev Biol Anim. 2015 Aug;51(7):655-61. doi: 10.1007/s11626-015-9877-z. Epub 2015 Mar 21.
9
Crucial genes and pathways in chicken germ stem cell differentiation.鸡生殖干细胞分化中的关键基因和信号通路。
J Biol Chem. 2015 May 22;290(21):13605-21. doi: 10.1074/jbc.M114.601401. Epub 2015 Apr 6.
10
Hedgehog-Gli1 signaling regelates differentiation of chicken (Gallus gallus) embryonic stem cells to male germ cells.刺猬索尼信号通路调控鸡(原鸡)胚胎干细胞向雄性生殖细胞的分化。
Anim Reprod Sci. 2017 Jul;182:9-20. doi: 10.1016/j.anireprosci.2017.02.002. Epub 2017 Feb 10.

引用本文的文献

1
RNA-Seq and ATAC-Seq Reveal CYP26A1-Mediated Regulation of Retinoic Acid-Induced Meiosis in Chicken Primordial Germ Cells.RNA测序和转座酶可及性染色质测序揭示CYP26A1介导的鸡原始生殖细胞中视黄酸诱导减数分裂的调控
Animals (Basel). 2024 Dec 25;15(1):23. doi: 10.3390/ani15010023.
2
Analysis of the differentially expressed genes in the combs and testes of Qingyuan partridge roosters at different developmental stages.分析不同发育阶段清远麻鸡鸡冠和睾丸组织中的差异表达基因。
BMC Genomics. 2024 Jan 4;25(1):33. doi: 10.1186/s12864-024-09960-2.
3
Dissecting chicken germ cell dynamics by combining a germ cell tracing transgenic chicken model with single-cell RNA sequencing.

本文引用的文献

1
Cell-type-specific regulation of genes involved in testicular lipid metabolism: fatty acid-binding proteins, diacylglycerol acyltransferases, and perilipin 2.睾丸脂质代谢相关基因的细胞类型特异性调控:脂肪酸结合蛋白、二酰基甘油酰基转移酶和 perilipin 2。
Reproduction. 2013 Oct 1;146(5):471-80. doi: 10.1530/REP-13-0199. Print 2013.
2
The lipid fraction of human milk initiates adipocyte differentiation in 3T3-L1 cells.人乳中的脂质部分可启动 3T3-L1 细胞的脂肪细胞分化。
Early Hum Dev. 2013 Sep;89(9):713-9. doi: 10.1016/j.earlhumdev.2013.05.002. Epub 2013 Jun 10.
3
Uncovering the complexity of transcriptomes with RNA-Seq.
通过将生殖细胞追踪转基因鸡模型与单细胞RNA测序相结合来剖析鸡生殖细胞动力学。
Comput Struct Biotechnol J. 2022 Apr 2;20:1654-1669. doi: 10.1016/j.csbj.2022.03.040. eCollection 2022.
4
CYP1A1 based on metabolism of xenobiotics by cytochrome P450 regulates chicken male germ cell differentiation.基于细胞色素P450对外源化合物代谢的CYP1A1调节鸡雄性生殖细胞分化。
In Vitro Cell Dev Biol Anim. 2017 Apr;53(4):293-303. doi: 10.1007/s11626-016-0108-z. Epub 2017 Mar 31.
利用RNA测序揭示转录组的复杂性。
J Biomed Biotechnol. 2010;2010:853916. doi: 10.1155/2010/853916. Epub 2010 Jun 27.
4
Dynamic regulation of alternative splicing and chromatin structure in Drosophila gonads revealed by RNA-seq.通过 RNA-seq 揭示果蝇性腺中可变剪接和染色质结构的动态调控。
Cell Res. 2010 Jul;20(7):763-83. doi: 10.1038/cr.2010.64. Epub 2010 May 4.
5
Human DAZL, DAZ and BOULE genes modulate primordial germ-cell and haploid gamete formation.人类 DAZL、DAZ 和 BOULE 基因调节原始生殖细胞和单倍体配子的形成。
Nature. 2009 Nov 12;462(7270):222-5. doi: 10.1038/nature08562. Epub 2009 Oct 28.
6
RNA-Seq: a revolutionary tool for transcriptomics.RNA测序:转录组学的革命性工具。
Nat Rev Genet. 2009 Jan;10(1):57-63. doi: 10.1038/nrg2484.
7
Stem cell transcriptome profiling via massive-scale mRNA sequencing.通过大规模mRNA测序进行干细胞转录组分析。
Nat Methods. 2008 Jul;5(7):613-9. doi: 10.1038/nmeth.1223. Epub 2008 May 30.
8
Mapping and quantifying mammalian transcriptomes by RNA-Seq.通过RNA测序对哺乳动物转录组进行定位和定量分析。
Nat Methods. 2008 Jul;5(7):621-8. doi: 10.1038/nmeth.1226. Epub 2008 May 30.
9
The transcriptional landscape of the yeast genome defined by RNA sequencing.通过RNA测序定义的酵母基因组转录图谱。
Science. 2008 Jun 6;320(5881):1344-9. doi: 10.1126/science.1158441. Epub 2008 May 1.
10
In vitro differentiation of male mouse embryonic stem cells into both presumptive sperm cells and oocytes.雄性小鼠胚胎干细胞在体外分化为假定的精子细胞和卵母细胞。
Cloning Stem Cells. 2007 Winter;9(4):535-48. doi: 10.1089/clo.2007.0031.