Ågren J Arvid, Greiner Stephan, Johnson Marc T J, Wright Stephen I
Department of Ecology and Evolutionary Biology, University of Toronto, Toronto, Ontario, M5S 3B2, Canada.
Evolution. 2015 Apr;69(4):1053-62. doi: 10.1111/evo.12627. Epub 2015 Mar 30.
Genome size varies dramatically across species, but despite an abundance of attention there is little agreement on the relative contributions of selective and neutral processes in governing this variation. The rate of sex can potentially play an important role in genome size evolution because of its effect on the efficacy of selection and transmission of transposable elements (TEs). Here, we used a phylogenetic comparative approach and whole genome sequencing to investigate the contribution of sex and TE content to genome size variation in the evening primrose (Oenothera) genus. We determined genome size using flow cytometry for 30 species that vary in genetic system and find that variation in sexual/asexual reproduction cannot explain the almost twofold variation in genome size. Moreover, using whole genome sequences of three species of varying genome sizes and reproductive system, we found that genome size was not associated with TE abundance; instead the larger genomes had a higher abundance of simple sequence repeats. Although it has long been clear that sexual reproduction may affect various aspects of genome evolution in general and TE evolution in particular, it does not appear to have played a major role in genome size evolution in the evening primroses.
基因组大小在不同物种间差异巨大,但尽管受到广泛关注,对于选择过程和中性过程在控制这种差异中所起的相对作用,人们却几乎没有达成共识。由于性别对选择效率和转座元件(TEs)传递的影响,性别比例可能在基因组大小进化中发挥重要作用。在此,我们采用系统发育比较方法和全基因组测序,来研究性别和TE含量对月见草属基因组大小变异的贡献。我们使用流式细胞术测定了30个遗传系统各异的物种的基因组大小,发现有性/无性繁殖的差异并不能解释基因组大小近两倍的差异。此外,通过对三个基因组大小和生殖系统各异的物种进行全基因组测序,我们发现基因组大小与TE丰度并无关联;相反,较大的基因组具有更高的简单序列重复丰度。尽管长期以来很明显,有性生殖可能总体上会影响基因组进化的各个方面,尤其是TE进化,但它似乎在月见草的基因组大小进化中并未发挥主要作用。