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A common variant mapping to CACNA1A is associated with susceptibility to exfoliation syndrome.

作者信息

Aung Tin, Ozaki Mineo, Mizoguchi Takanori, Allingham R Rand, Li Zheng, Haripriya Aravind, Nakano Satoko, Uebe Steffen, Harder Jeffrey M, Chan Anita S Y, Lee Mei Chin, Burdon Kathryn P, Astakhov Yury S, Abu-Amero Khaled K, Zenteno Juan C, Nilgün Yildirim, Zarnowski Tomasz, Pakravan Mohammad, Safieh Leen Abu, Jia Liyun, Wang Ya Xing, Williams Susan, Paoli Daniela, Schlottmann Patricio G, Huang Lulin, Sim Kar Seng, Foo Jia Nee, Nakano Masakazu, Ikeda Yoko, Kumar Rajesh S, Ueno Morio, Manabe Shin-ichi, Hayashi Ken, Kazama Shigeyasu, Ideta Ryuichi, Mori Yosai, Miyata Kazunori, Sugiyama Kazuhisa, Higashide Tomomi, Chihara Etsuo, Inoue Kenji, Ishiko Satoshi, Yoshida Akitoshi, Yanagi Masahide, Kiuchi Yoshiaki, Aihara Makoto, Ohashi Tsutomu, Sakurai Toshiya, Sugimoto Takako, Chuman Hideki, Matsuda Fumihiko, Yamashiro Kenji, Gotoh Norimoto, Miyake Masahiro, Astakhov Sergei Y, Osman Essam A, Al-Obeidan Saleh A, Owaidhah Ohoud, Al-Jasim Leyla, Al Shahwan Sami, Fogarty Rhys A, Leo Paul, Yetkin Yaz, Oğuz Çilingir, Kanavi Mozhgan Rezaei, Beni Afsaneh Nederi, Yazdani Shahin, Akopov Evgeny L, Toh Kai-Yee, Howell Gareth R, Orr Andrew C, Goh Yufen, Meah Wee Yang, Peh Su Qin, Kosior-Jarecka Ewa, Lukasik Urszula, Krumbiegel Mandy, Vithana Eranga N, Wong Tien Yin, Liu Yutao, Koch Allison E Ashley, Challa Pratap, Rautenbach Robyn M, Mackey David A, Hewitt Alex W, Mitchell Paul, Wang Jie Jin, Ziskind Ari, Carmichael Trevor, Ramakrishnan Rangappa, Narendran Kalpana, Venkatesh Rangaraj, Vijayan Saravanan, Zhao Peiquan, Chen Xueyi, Guadarrama-Vallejo Dalia, Cheng Ching Yu, Perera Shamira A, Husain Rahat, Ho Su-Ling, Welge-Luessen Ulrich-Christoph, Mardin Christian, Schloetzer-Schrehardt Ursula, Hillmer Axel M, Herms Stefan, Moebus Susanne, Nöthen Markus M, Weisschuh Nicole, Shetty Rohit, Ghosh Arkasubhra, Teo Yik Ying, Brown Matthew A, Lischinsky Ignacio, Crowston Jonathan G, Coote Michael, Zhao Bowen, Sang Jinghong, Zhang Nihong, You Qisheng, Vysochinskaya Vera, Founti Panayiota, Chatzikyriakidou Anthoula, Lambropoulos Alexandros, Anastasopoulos Eleftherios, Coleman Anne L, Wilson M Roy, Rhee Douglas J, Kang Jae Hee, May-Bolchakova Inna, Heegaard Steffen, Mori Kazuhiko, Alward Wallace L M, Jonas Jost B, Xu Liang, Liebmann Jeffrey M, Chowbay Balram, Schaeffeler Elke, Schwab Matthias, Lerner Fabian, Wang Ningli, Yang Zhenglin, Frezzotti Paolo, Kinoshita Shigeru, Fingert John H, Inatani Masaru, Tashiro Kei, Reis André, Edward Deepak P, Pasquale Louis R, Kubota Toshiaki, Wiggs Janey L, Pasutto Francesca, Topouzis Fotis, Dubina Michael, Craig Jamie E, Yoshimura Nagahisa, Sundaresan Periasamy, John Simon W M, Ritch Robert, Hauser Michael A, Khor Chiea-Chuen

机构信息

1] Singapore Eye Research Institute, Singapore. [2] Singapore National Eye Center, Singapore. [3] Department of Ophthalmology, Yong Loo Lin School of Medicine, National University of Singapore, Singapore. [4] Division of Human Genetics, Genome Institute of Singapore, Singapore. [5] Duke University-National University of Singapore Graduate Medical School, Singapore.

1] Ozaki Eye Hospital, Hyuga, Japan. [2] Hayashi Eye Hospital, Fukuoka, Japan.

出版信息

Nat Genet. 2015 Apr;47(4):387-92. doi: 10.1038/ng.3226. Epub 2015 Feb 23.


DOI:10.1038/ng.3226
PMID:25706626
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC4605818/
Abstract

Exfoliation syndrome (XFS) is the most common recognizable cause of open-angle glaucoma worldwide. To better understand the etiology of XFS, we conducted a genome-wide association study (GWAS) of 1,484 cases and 1,188 controls from Japan and followed up the most significant findings in a further 6,901 cases and 20,727 controls from 17 countries across 6 continents. We discovered a genome-wide significant association between a new locus (CACNA1A rs4926244) and increased susceptibility to XFS (odds ratio (OR) = 1.16, P = 3.36 × 10(-11)). Although we also confirmed overwhelming association at the LOXL1 locus, the key SNP marker (LOXL1 rs4886776) demonstrated allelic reversal depending on the ancestry group (Japanese: OR(A allele) = 9.87, P = 2.13 × 10(-217); non-Japanese: OR(A allele) = 0.49, P = 2.35 × 10(-31)). Our findings represent the first genetic locus outside of LOXL1 surpassing genome-wide significance for XFS and provide insight into the biology and pathogenesis of the disease.

摘要

相似文献

[1]
A common variant mapping to CACNA1A is associated with susceptibility to exfoliation syndrome.

Nat Genet. 2015-4

[2]
Genetic association study of exfoliation syndrome identifies a protective rare variant at LOXL1 and five new susceptibility loci.

Nat Genet. 2017-7

[3]
Lysyl oxidase-like 1 polymorphisms and exfoliation syndrome in the Japanese population.

Am J Ophthalmol. 2008-3

[4]
Evaluation of LOXL1 gene polymorphisms in exfoliation syndrome and exfoliation glaucoma.

Mol Vis. 2008-3-17

[5]
Evaluation of LOXL1 polymorphisms in eyes with exfoliation glaucoma in Japanese.

Mol Vis. 2008-7-21

[6]
Novel common variants and susceptible haplotype for exfoliation glaucoma specific to Asian population.

Sci Rep. 2014-6-18

[7]
Exfoliation syndrome and exfoliation glaucoma-associated LOXL1 variations are not involved in pigment dispersion syndrome and pigmentary glaucoma.

Mol Vis. 2008-7-9

[8]
Development of novel LOXL1 genotyping method and evaluation of LOXL1, APOE and MTHFR polymorphisms in exfoliation syndrome/glaucoma in a Greek population.

Mol Vis. 2013-5-6

[9]
Evaluation of LOXL1 polymorphisms in exfoliation syndrome in the Uygur population.

Mol Vis. 2011

[10]
An investigation into LOXL1 variants in black South African individuals with exfoliation syndrome.

Arch Ophthalmol. 2011-2

引用本文的文献

[1]
Prediagnostic Plasma Metabolomic Profiles Using NMR for Exfoliation Glaucoma Among US Health Professionals.

Metabolites. 2025-7-9

[2]
Genetic Association of Primary Angle-Closure Glaucoma and Disease Progression.

Clin Exp Ophthalmol. 2025-8

[3]
The Ocular Surface and the Anterior Segment of the Eye in the Pseudoexfoliation Syndrome: A Comprehensive Review.

Int J Mol Sci. 2025-1-10

[4]
Zonulopathies as Genetic Disorders of the Extracellular Matrix.

Genes (Basel). 2024-12-20

[5]
Exfoliation syndrome genetics in the era of post-GWAS.

Vision Res. 2025-1

[6]
Role of N6-methyladenosine-related lncRnas in pseudoexfoliation glaucoma.

Epigenetics. 2024-12

[7]
Lack of Association between Variants and Pigment Dispersion Syndrome/Pigmentary Glaucoma: A Meta-Analysis.

Genes (Basel). 2024-1-26

[8]
Prevalence Ratio of Primary Angle-Closure and Primary Open-Angle Glaucoma in Asian Population: A Meta-Analysis and Multiple Meta-Regression Analysis.

Korean J Ophthalmol. 2024-2

[9]
Twenty Novel MicroRNAs in the Aqueous Humor of Pseudoexfoliation Glaucoma Patients.

Cells. 2023-2-24

[10]
Analysis of genetically determined gene expression suggests role of inflammatory processes in exfoliation syndrome.

BMC Genomics. 2023-2-16

本文引用的文献

[1]
Novel common variants and susceptible haplotype for exfoliation glaucoma specific to Asian population.

Sci Rep. 2014-6-18

[2]
Expression of the primary angle closure glaucoma (PACG) susceptibility gene PLEKHA7 in endothelial and epithelial cell junctions in the eye.

Invest Ophthalmol Vis Sci. 2014-5-6

[3]
Systematic identification of trans eQTLs as putative drivers of known disease associations.

Nat Genet. 2013-9-8

[4]
Annotation of functional variation in personal genomes using RegulomeDB.

Genome Res. 2012-9

[5]
HaploReg: a resource for exploring chromatin states, conservation, and regulatory motif alterations within sets of genetically linked variants.

Nucleic Acids Res. 2011-11-7

[6]
Splice isoform-specific suppression of the Cav2.1 variant underlying spinocerebellar ataxia type 6.

Neurobiol Dis. 2011-4-29

[7]
LOXL1 promoter haplotypes are associated with exfoliation syndrome in a U.S. Caucasian population.

Invest Ophthalmol Vis Sci. 2011-4-12

[8]
Genome-wide association study with DNA pooling identifies variants at CNTNAP2 associated with pseudoexfoliation syndrome.

Eur J Hum Genet. 2010-9-1

[9]
METAL: fast and efficient meta-analysis of genomewide association scans.

Bioinformatics. 2010-7-8

[10]
Major LOXL1 risk allele is reversed in exfoliation glaucoma in a black South African population.

Mol Vis. 2010-4-21

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