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可培养的抗砷细菌群落的生理、分类学和分子特征的测定

Determination of physiological, taxonomic, and molecular characteristics of a cultivable arsenic-resistant bacterial community.

作者信息

Cordi A, Pagnout C, Devin S, Poirel J, Billard P, Dollard M A, Bauda P

机构信息

Laboratoire Interdisciplinaire des Environnements Continentaux (LIEC), UMR 7360, CNRS, Université de Lorraine, Campus Bridoux, rue du Général Delestraint, 57070, Metz, France.

出版信息

Environ Sci Pollut Res Int. 2015 Sep;22(18):13753-63. doi: 10.1007/s11356-014-3840-5. Epub 2015 Feb 27.

Abstract

A collection of 219 bacterial arsenic-resistant isolates was constituted from neutral arsenic mine drainage sediments. Isolates were grown aerobically or anaerobically during 21 days on solid DR2A medium using agar or gelan gum as gelling agent, with 7 mM As(III) or 20 mM As(V) as selective pressure. Interestingly, the sum of the different incubation conditions used (arsenic form, gelling agent, oxygen pressure) results in an overall increase of the isolate diversity. Isolated strains mainly belonged to Proteobacteria (63%), Actinobacteria (25%), and Bacteroidetes (10%). The most representative genera were Pseudomonas (20%), Acinetobacter (8%), and Serratia (15%) among the Proteobacteria; Rhodococcus (13%) and Microbacterium (5%) among Actinobacteria; and Flavobacterium (13%) among the Bacteroidetes. Isolates were screened for the presence of arsenic-related genes (arsB, ACR3(1), ACR3(2), aioA, arsM, and arrA). In this way, 106 ACR3(1)-, 74 arsB-, 22 aioA-, 14 ACR3(2)-, and one arsM-positive PCR products were obtained and sequenced. Analysis of isolate sensitivity toward metalloids (arsenite, arsenate, and antimonite) revealed correlations between taxonomy, sensitivity, and genotype. Antimonite sensitivity correlated with the presence of ACR3(1) mainly present in Bacteroidetes and Actinobacteria, and arsenite or antimonite resistance correlated with arsB gene presence. The presence of either aioA gene or several different arsenite carrier genes did not ensure a high level of arsenic resistance in the tested conditions.

摘要

从砷矿中性排水沉积物中分离出219株抗砷细菌。这些菌株在固体DR2A培养基上,以琼脂或结冷胶作为凝固剂,在7 mM As(III)或20 mM As(V)的选择压力下,分别进行好氧或厌氧培养21天。有趣的是,不同培养条件(砷形态、凝固剂、氧气压力)的组合总体上增加了菌株的多样性。分离出的菌株主要属于变形菌门(63%)、放线菌门(25%)和拟杆菌门(10%)。在变形菌门中,最具代表性的属是假单胞菌属(20%)、不动杆菌属(8%)和沙雷氏菌属(15%);在放线菌门中是红球菌属(13%)和微杆菌属(5%);在拟杆菌门中是黄杆菌属(13%)。对分离菌株进行砷相关基因(arsB、ACR3(1)、ACR3(2)、aioA、arsM和arrA)的筛选。通过这种方法,获得了106个ACR3(1)阳性、74个arsB阳性、22个aioA阳性、14个ACR3(2)阳性和1个arsM阳性的PCR产物并进行了测序。对分离菌株对类金属(亚砷酸盐、砷酸盐和亚锑酸盐)的敏感性分析揭示了分类学、敏感性和基因型之间的相关性。亚锑酸盐敏感性与主要存在于拟杆菌门和放线菌门中的ACR3(1)的存在相关,而亚砷酸盐或亚锑酸盐抗性与arsB基因的存在相关。在测试条件下,aioA基因或几种不同的亚砷酸盐载体基因的存在并不能确保高水平的抗砷性。

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