• 文献检索
  • 文档翻译
  • 深度研究
  • 学术资讯
  • Suppr Zotero 插件Zotero 插件
  • 邀请有礼
  • 套餐&价格
  • 历史记录
应用&插件
Suppr Zotero 插件Zotero 插件浏览器插件Mac 客户端Windows 客户端微信小程序
定价
高级版会员购买积分包购买API积分包
服务
文献检索文档翻译深度研究API 文档MCP 服务
关于我们
关于 Suppr公司介绍联系我们用户协议隐私条款
关注我们

Suppr 超能文献

核心技术专利:CN118964589B侵权必究
粤ICP备2023148730 号-1Suppr @ 2026

文献检索

告别复杂PubMed语法,用中文像聊天一样搜索,搜遍4000万医学文献。AI智能推荐,让科研检索更轻松。

立即免费搜索

文件翻译

保留排版,准确专业,支持PDF/Word/PPT等文件格式,支持 12+语言互译。

免费翻译文档

深度研究

AI帮你快速写综述,25分钟生成高质量综述,智能提取关键信息,辅助科研写作。

立即免费体验

使用GlycoWorkbench软件工具对糖组学质谱和串联质谱谱图进行注释。

Annotation of glycomics MS and MS/MS spectra using the GlycoWorkbench software tool.

作者信息

Damerell David, Ceroni Alessio, Maass Kai, Ranzinger René, Dell Anne, Haslam Stuart M

机构信息

Department of Life Sciences, Faculty of Natural Sciences, Sir Ernst Chain Building, Imperial College London, South Kensington Campus, London, SW7 2AZ, UK.

出版信息

Methods Mol Biol. 2015;1273:3-15. doi: 10.1007/978-1-4939-2343-4_1.

DOI:10.1007/978-1-4939-2343-4_1
PMID:25753699
Abstract

The GlycoWorkbench software tool allows users to semiautomatically annotate glycomics MS and MS/MS spectra and MS glycoproteomics spectra. The GlycanBuilder software tool is embedded within GlycoWorkbench allowing users to draw glycan structures and export images of the drawn structures. This chapter demonstrates to users how to draw glycan structures within GlycoWorkbench using the GlycanBuilder software tool. This chapter also demonstrates how to use GlycoWorkbench to import MS and MS/MS glycomics spectra and use the cascading annotation feature to annotate both the MS and MS/MS spectra with a single command.

摘要

GlycoWorkbench软件工具允许用户对糖组学质谱和串联质谱光谱以及质谱糖蛋白质组学光谱进行半自动注释。GlycanBuilder软件工具嵌入在GlycoWorkbench中,允许用户绘制聚糖结构并导出所绘制结构的图像。本章向用户演示如何使用GlycanBuilder软件工具在GlycoWorkbench中绘制聚糖结构。本章还演示了如何使用GlycoWorkbench导入质谱和串联质谱糖组学光谱,并使用级联注释功能通过单个命令对质谱和串联质谱光谱进行注释。

相似文献

1
Annotation of glycomics MS and MS/MS spectra using the GlycoWorkbench software tool.使用GlycoWorkbench软件工具对糖组学质谱和串联质谱谱图进行注释。
Methods Mol Biol. 2015;1273:3-15. doi: 10.1007/978-1-4939-2343-4_1.
2
The GlycanBuilder and GlycoWorkbench glycoinformatics tools: updates and new developments.聚糖构建器和 GlycoWorkbench 糖生物学信息学工具:更新和新进展。
Biol Chem. 2012 Nov;393(11):1357-62. doi: 10.1515/hsz-2012-0135.
3
GlycoWorkbench: a tool for the computer-assisted annotation of mass spectra of glycans.糖基工作平台:一种用于聚糖质谱计算机辅助注释的工具。
J Proteome Res. 2008 Apr;7(4):1650-9. doi: 10.1021/pr7008252. Epub 2008 Mar 1.
4
Glycoforest 1.0.糖组学资源库 1.0 版
Anal Chem. 2017 Oct 17;89(20):10932-10940. doi: 10.1021/acs.analchem.7b02754. Epub 2017 Sep 25.
5
GlyQ-IQ: glycomics quintavariate-informed quantification with high-performance computing and GlycoGrid 4D visualization.GlyQ-IQ:利用高性能计算和GlycoGrid 4D可视化进行的糖组学五元信息定量分析
Anal Chem. 2014 Jul 1;86(13):6268-76. doi: 10.1021/ac501492f. Epub 2014 Jun 13.
6
Software platform for high-throughput glycomics.高通量糖组学软件平台
Anal Chem. 2009 May 1;81(9):3252-60. doi: 10.1021/ac802408f.
7
Databases and Associated Tools for Glycomics and Glycoproteomics.糖组学和糖蛋白质组学的数据库及相关工具
Methods Mol Biol. 2017;1503:235-264. doi: 10.1007/978-1-4939-6493-2_18.
8
The GlycanBuilder: a fast, intuitive and flexible software tool for building and displaying glycan structures.聚糖构建器:一款用于构建和展示聚糖结构的快速、直观且灵活的软件工具。
Source Code Biol Med. 2007 Aug 7;2:3. doi: 10.1186/1751-0473-2-3.
9
A Machine Learning Based Approach to de novo Sequencing of Glycans from Tandem Mass Spectrometry Spectrum.一种基于机器学习的从串联质谱谱图中进行聚糖从头测序的方法。
IEEE/ACM Trans Comput Biol Bioinform. 2015 Nov-Dec;12(6):1267-74. doi: 10.1109/TCBB.2015.2430317.
10
Implementation of GlycanBuilder to draw a wide variety of ambiguous glycans.使用GlycanBuilder绘制各种复杂聚糖。
Carbohydr Res. 2017 Jun 5;445:104-116. doi: 10.1016/j.carres.2017.04.015. Epub 2017 Apr 19.

引用本文的文献

1
GlycoIP: an integrated platform for simultaneous and site-specific glycosylation analysis of human semen.GlycoIP:一个用于同时进行人精液位点特异性糖基化分析的综合平台。
Front Chem. 2025 May 19;13:1569561. doi: 10.3389/fchem.2025.1569561. eCollection 2025.
2
Recent Developments and Application of Mass Spectrometry Imaging in N-Glycosylation Studies: An Overview.质谱成像在N-糖基化研究中的最新进展与应用:综述
Mass Spectrom (Tokyo). 2024;13(1):A0142. doi: 10.5702/massspectrometry.A0142. Epub 2024 Feb 27.
3
Spatial Omics Reveals that Cancer-Associated Glycan Changes Occur Early in Liver Disease Development in a Western Diet Mouse Model of MASLD.
空间组学揭示,在 MASLD 的西方饮食小鼠模型中,癌症相关糖基变化发生在肝病发展的早期。
J Proteome Res. 2024 Feb 2;23(2):786-796. doi: 10.1021/acs.jproteome.3c00672. Epub 2024 Jan 11.
4
Bioorthogonal Chemical Labeling Probes Targeting Sialic Acid Isomers for -Glycan MALDI Imaging Mass Spectrometry of Tissues, Cells, and Biofluids.用于组织、细胞和生物流体中 - 聚糖 MALDI 成像质谱的靶向唾液酸异构体的生物正交化学标记探针。
Anal Chem. 2023 May 16;95(19):7475-7486. doi: 10.1021/acs.analchem.2c04882. Epub 2023 May 1.
5
Heightened Proinflammatory Glycosylation of Borrelia burgdorferi IgG Antibodies in Synovial Fluid in Patients With Antibiotic-Refractory Lyme Arthritis.关节滑液中抗生素难治性莱姆关节炎患者的伯氏疏螺旋体 IgG 抗体的促炎糖基化增强。
Arthritis Rheumatol. 2023 Jul;75(7):1263-1274. doi: 10.1002/art.42465. Epub 2023 May 11.
6
Integrated glycomics strategy for the evaluation of glycosylation alterations in salivary proteins associated with type 2 diabetes mellitus.用于评估与2型糖尿病相关的唾液蛋白质糖基化改变的综合糖组学策略
RSC Adv. 2020 Nov 1;10(65):39739-39752. doi: 10.1039/d0ra05466f. eCollection 2020 Oct 27.
7
Straightforward Analysis of Sulfated Glycosaminoglycans by MALDI-TOF Mass Spectrometry from Biological Samples.通过基质辅助激光解吸电离飞行时间质谱对生物样品中的硫酸化糖胺聚糖进行直接分析。
Biology (Basel). 2022 Mar 25;11(4):506. doi: 10.3390/biology11040506.
8
Applications and continued evolution of glycan imaging mass spectrometry.聚糖成像质谱技术的应用和持续发展。
Mass Spectrom Rev. 2023 Mar;42(2):674-705. doi: 10.1002/mas.21725. Epub 2021 Aug 15.
9
Altered Glycosylation in the Aging Heart.衰老心脏中的糖基化改变
Front Mol Biosci. 2021 May 28;8:673044. doi: 10.3389/fmolb.2021.673044. eCollection 2021.
10
Imaging Mass Spectrometry and Lectin Analysis of N-Linked Glycans in Carbohydrate Antigen-Defined Pancreatic Cancer Tissues.基于糖类抗原的胰腺癌组织中 N 连接糖肽的成像质谱分析和凝集素分析。
Mol Cell Proteomics. 2021;20:100012. doi: 10.1074/mcp.RA120.002256. Epub 2020 Dec 8.