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采用密度泛函理论方法对N'-羟基嘧啶-2-甲脒的振动光谱(实验和理论)、分子结构、自然键轨道、最高占据分子轨道-最低未占据分子轨道能量、马利肯电荷及热力学分析

Vibrational spectra (experimental and theoretical), molecular structure, natural bond orbital, HOMO-LUMO energy, Mulliken charge and thermodynamic analysis of N'-hydroxy-pyrimidine-2-carboximidamide by DFT approach.

作者信息

Jasmine N Jeeva, Muthiah P Thomas, Arunagiri C, Subashini A

机构信息

School of Chemistry, Bharathidasan University, Tiruchirappalli 620 024, (TN), India.

PG & Research Department of Physics, Government Arts College, Ariyalur 621 713, (TN), India.

出版信息

Spectrochim Acta A Mol Biomol Spectrosc. 2015 Jun 5;144:215-25. doi: 10.1016/j.saa.2015.02.100. Epub 2015 Feb 27.

Abstract

The FT-IR, FT-Raman, (1)H, (13)C NMR and UV-Visible spectral measurements of N'-hydroxy-pyrimidine-2-carboximidamide (HPCI) and complete analysis of the observed spectra have been proposed. DFT calculation has been performed and the structural parameters of the compound was determined from the optimized geometry with 6-311+G(d,p) basis set and giving energies, harmonic vibrational frequencies and force constants. The results of the optimized molecular structure are presented and compared with the experimental. The geometric parameters, harmonic vibrational frequencies and chemical shifts were compared with the experimental data of the molecule. The title compound, C5H6N4O, is approximately planar, with an angle of 11.04 (15)°. The crystal structure is also stabilized by intermolecular N-H⋯O, N-H⋯N, O-H⋯N, C-H⋯O hydrogen bond and offset π-π stacking interactions. The influences of hydroxy and carboximidamide groups on the skeletal modes and proton chemical shifts have been investigated. Moreover, we have not only simulated highest occupied molecular orbital (HOMO) and lowest unoccupied molecular orbital (LUMO) but also determined the transition state and band gap. The kinetic, thermodynamic stability and chemical hardness of the molecule have been determined. Complete NBO analysis was also carried out to find out the intermolecular electronic interactions and their stabilization energy. The thermodynamic properties like entropies and their correlations with temperatures were also obtained from the harmonic frequencies of the optimized structure.

摘要

已对N'-羟基嘧啶-2-甲脒(HPCI)进行了傅里叶变换红外光谱(FT-IR)、傅里叶变换拉曼光谱(FT-Raman)、氢核磁共振(¹H)、碳核磁共振(¹³C NMR)以及紫外可见光谱测量,并对观测到的光谱进行了完整分析。进行了密度泛函理论(DFT)计算,使用6-311+G(d,p)基组从优化几何结构确定了该化合物的结构参数,并给出了能量、简谐振动频率和力常数。展示了优化分子结构的结果并与实验结果进行比较。将几何参数、简谐振动频率和化学位移与该分子的实验数据进行了比较。标题化合物C₅H₆N₄O近似呈平面结构,夹角为11.04 (15)°。晶体结构还通过分子间的N-H⋯O、N-H⋯N、O-H⋯N、C-H⋯O氢键以及π-π堆积相互作用得以稳定。研究了羟基和甲脒基团对骨架模式和质子化学位移的影响。此外,我们不仅模拟了最高占据分子轨道(HOMO)和最低未占据分子轨道(LUMO),还确定了过渡态和带隙。确定了该分子的动力学、热力学稳定性和化学硬度。还进行了完整的自然键轨道(NBO)分析以找出分子间的电子相互作用及其稳定能。还从优化结构的简谐频率获得了诸如熵等热力学性质及其与温度的相关性。

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