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从实验动物学到大数据:动物发育研究中的观察与整合

From experimental zoology to big data: Observation and integration in the study of animal development.

作者信息

Bolker Jessica, Brauckmann Sabine

机构信息

Department of Biological Sciences, University of New Hampshire, Durham, New Hampshire.

Teaduskeskus, University of Tartu, Tartu, Estonia.

出版信息

J Exp Zool A Ecol Genet Physiol. 2015 Jun;323(5):277-91. doi: 10.1002/jez.1924. Epub 2015 Mar 10.

DOI:10.1002/jez.1924
PMID:25757656
Abstract

The founding of the Journal of Experimental Zoology in 1904 was inspired by a widespread turn toward experimental biology in the 19th century. The founding editors sought to promote experimental, laboratory-based approaches, particularly in developmental biology. This agenda raised key practical and epistemological questions about how and where to study development: Does the environment matter? How do we know that a cell or embryo isolated to facilitate observation reveals normal developmental processes? How can we integrate descriptive and experimental data? R.G. Harrison, the journal's first editor, grappled with these questions in justifying his use of cell culture to study neural patterning. Others confronted them in different contexts: for example, F.B. Sumner insisted on the primacy of fieldwork in his studies on adaptation, but also performed breeding experiments using wild-collected animals. The work of Harrison, Sumner, and other early contributors exemplified both the power of new techniques, and the meticulous explanation of practice and epistemology that was marshaled to promote experimental approaches. A century later, experimentation is widely viewed as the standard way to study development; yet at the same time, cutting-edge "big data" projects are essentially descriptive, closer to natural history than to the approaches championed by Harrison et al. Thus, the original questions about how and where we can best learn about development are still with us. Examining their history can inform current efforts to incorporate data from experiment and description, lab and field, and a broad range of organisms and disciplines, into an integrated understanding of animal development.

摘要

1904年《实验动物学杂志》的创立受到了19世纪广泛转向实验生物学的启发。创刊编辑们力图推广基于实验室的实验方法,尤其是在发育生物学领域。这一议程引发了关于如何以及在何处研究发育的关键实践和认识论问题:环境重要吗?我们如何知道为便于观察而分离出的细胞或胚胎揭示的是正常的发育过程?我们如何整合描述性和实验性数据?该杂志的首任编辑R.G. 哈里森在为自己使用细胞培养研究神经模式辩护时,努力思考这些问题。其他人在不同背景下面对这些问题:例如,F.B. 萨姆纳在其关于适应性的研究中坚持实地考察的首要地位,但也使用野外采集的动物进行育种实验。哈里森、萨姆纳以及其他早期贡献者的工作既体现了新技术的力量,也体现了为推广实验方法而精心进行的实践和认识论阐释。一个世纪后,实验被广泛视为研究发育的标准方式;然而与此同时,前沿的“大数据”项目本质上是描述性的,更接近自然史而非哈里森等人所倡导的方法。因此,关于我们如何以及在何处能够最好地了解发育的最初问题仍然存在。审视它们的历史可以为当前将来自实验与描述、实验室与野外以及广泛的生物体和学科的数据整合到对动物发育的综合理解中的努力提供参考。

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