从森林土壤中分离出的木质素降解细菌解鸟氨酸拉乌尔菌S12菌株的全基因组序列
Complete Genome Sequence of Raoultella ornithinolytica Strain S12, a Lignin-Degrading Bacterium Isolated from Forest Soil.
作者信息
Bao Wenying, Zhou Yun, Jiang Jingwei, Xu Zhihui, Hou Liyuan, Leung Frederick Chi-Ching
机构信息
Bioinformatics Centre, Nanjing Agricultural University, Nanjing, China.
出版信息
Genome Announc. 2015 Mar 19;3(2):e00104-15. doi: 10.1128/genomeA.00104-15.
Abstract
We report the complete genome sequence of Raoultella ornithinolytica strain S12, isolated from a soil sample collected from areas bordering rotten wood and wet soil on Mt. Zijin, Nanjing. The complete genome of this bacterium may contribute toward the discovery of efficient lignin-degrading pathways.
摘要
我们报道了从南京紫金山腐烂木材和潮湿土壤接壤区域采集的土壤样本中分离出的解鸟氨酸拉乌尔菌S12菌株的全基因组序列。该细菌的全基因组可能有助于发现高效的木质素降解途径。
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本文引用的文献
1
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BMC Biotechnol. 2011 Oct 13;11:94. doi: 10.1186/1472-6750-11-94.
2
KAAS: an automatic genome annotation and pathway reconstruction server.KAAS：一个自动基因组注释和通路重建服务器。
Nucleic Acids Res. 2007 Jul;35(Web Server issue):W182-5. doi: 10.1093/nar/gkm321. Epub 2007 May 25.
3
Sequencing of 16S rDNA of Klebsiella: taxonomic relations within the genus and to other Enterobacteriaceae.肺炎克雷伯菌16S rDNA测序：该属内及与其他肠杆菌科细菌的分类关系
Int J Med Microbiol. 2003 Feb;292(7-8):495-503. doi: 10.1078/1438-4221-00228.
4
Phylogenetic analyses of Klebsiella species delineate Klebsiella and Raoultella gen. nov., with description of Raoultella ornithinolytica comb. nov., Raoultella terrigena comb. nov. and Raoultella planticola comb. nov.克雷伯菌属的系统发育分析划分出克雷伯菌属和拉乌尔菌属（新属），并对解鸟氨酸拉乌尔菌（新组合）、土生拉乌尔菌（新组合）和植生拉乌尔菌（新组合）进行了描述。
Int J Syst Evol Microbiol. 2001 May;51(Pt 3):925-932. doi: 10.1099/00207713-51-3-925.
5
The COG database: a tool for genome-scale analysis of protein functions and evolution.COG数据库：一种用于蛋白质功能和进化的基因组规模分析的工具。
Nucleic Acids Res. 2000 Jan 1;28(1):33-6. doi: 10.1093/nar/28.1.33.
6
Gapped BLAST and PSI-BLAST: a new generation of protein database search programs.空位BLAST和位置特异性迭代BLAST：新一代蛋白质数据库搜索程序。
Nucleic Acids Res. 1997 Sep 1;25(17):3389-402. doi: 10.1093/nar/25.17.3389.
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