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基于气候介导的栖息地限制对沙丘鹤补充数量的最优种群预测。

Optimal population prediction of sandhill crane recruitment based on climate-mediated habitat limitations.

作者信息

Gerber Brian D, Kendall William L, Hooten Mevin B, Dubovsky James A, Drewien Roderick C

机构信息

Colorado Cooperative Fish and Wildlife Research Unit, Department of Fish, Wildlife and Conservation Biology, Colorado State University, Fort Collins, CO, 80523-1403, USA.

U.S. Geological Survey, Colorado Cooperative Fish and Wildlife Research Unit, Department of Fish, Wildlife and Conservation Biology, Colorado State University, Fort Collins, CO, 80523-1403, USA.

出版信息

J Anim Ecol. 2015 Sep;84(5):1299-310. doi: 10.1111/1365-2656.12370. Epub 2015 May 18.

DOI:10.1111/1365-2656.12370
PMID:25808951
Abstract
  1. Prediction is fundamental to scientific enquiry and application; however, ecologists tend to favour explanatory modelling. We discuss a predictive modelling framework to evaluate ecological hypotheses and to explore novel/unobserved environmental scenarios to assist conservation and management decision-makers. We apply this framework to develop an optimal predictive model for juvenile (<1 year old) sandhill crane Grus canadensis recruitment of the Rocky Mountain Population (RMP). We consider spatial climate predictors motivated by hypotheses of how drought across multiple time-scales and spring/summer weather affects recruitment. 2. Our predictive modelling framework focuses on developing a single model that includes all relevant predictor variables, regardless of collinearity. This model is then optimized for prediction by controlling model complexity using a data-driven approach that marginalizes or removes irrelevant predictors from the model. Specifically, we highlight two approaches of statistical regularization, Bayesian least absolute shrinkage and selection operator (LASSO) and ridge regression. 3. Our optimal predictive Bayesian LASSO and ridge regression models were similar and on average 37% superior in predictive accuracy to an explanatory modelling approach. Our predictive models confirmed a priori hypotheses that drought and cold summers negatively affect juvenile recruitment in the RMP. The effects of long-term drought can be alleviated by short-term wet spring-summer months; however, the alleviation of long-term drought has a much greater positive effect on juvenile recruitment. The number of freezing days and snowpack during the summer months can also negatively affect recruitment, while spring snowpack has a positive effect. 4. Breeding habitat, mediated through climate, is a limiting factor on population growth of sandhill cranes in the RMP, which could become more limiting with a changing climate (i.e. increased drought). These effects are likely not unique to cranes. The alteration of hydrological patterns and water levels by drought may impact many migratory, wetland nesting birds in the Rocky Mountains and beyond. 5. Generalizable predictive models (trained by out-of-sample fit and based on ecological hypotheses) are needed by conservation and management decision-makers. Statistical regularization improves predictions and provides a general framework for fitting models with a large number of predictors, even those with collinearity, to simultaneously identify an optimal predictive model while conducting rigorous Bayesian model selection. Our framework is important for understanding population dynamics under a changing climate and has direct applications for making harvest and habitat management decisions.
摘要
  1. 预测是科学探究与应用的基础;然而,生态学家往往更倾向于解释性建模。我们讨论了一个预测建模框架,用于评估生态假说,并探索新的/未观察到的环境情景,以协助保护和管理决策者。我们应用这个框架为落基山种群(RMP)的幼年(<1岁)沙丘鹤(加拿大鹤)的补充建立一个最优预测模型。我们考虑了由多个时间尺度的干旱以及春季/夏季天气如何影响补充的假说所驱动的空间气候预测因子。2. 我们的预测建模框架专注于开发一个包含所有相关预测变量的单一模型,而不考虑共线性。然后通过使用一种数据驱动的方法控制模型复杂性来优化这个模型,该方法将无关预测因子从模型中边缘化或去除。具体来说,我们重点介绍两种统计正则化方法,贝叶斯最小绝对收缩与选择算子(LASSO)和岭回归。3. 我们的最优预测贝叶斯LASSO模型和岭回归模型相似,并且在预测准确性上平均比一种解释性建模方法高出37%。我们的预测模型证实了先验假说,即干旱和寒冷的夏季对RMP中幼年沙丘鹤补充有负面影响。长期干旱的影响可以通过短期湿润的春夏月份得到缓解;然而,长期干旱的缓解对幼年沙丘鹤补充有更大的积极影响。夏季月份的冰冻天数和积雪量也会对补充产生负面影响,而春季积雪则有积极影响。4. 通过气候介导的繁殖栖息地是RMP中沙丘鹤种群增长的一个限制因素,随着气候的变化(即干旱加剧),这一限制可能会变得更加严重。这些影响可能并非沙丘鹤所独有。干旱导致的水文模式和水位变化可能会影响落基山脉及周边地区的许多迁徙湿地筑巢鸟类。5. 保护和管理决策者需要可推广的预测模型(通过样本外拟合训练并基于生态假说)。统计正则化提高了预测能力,并为拟合具有大量预测因子(甚至包括那些具有共线性的预测因子)的模型提供了一个通用框架,以便在进行严格的贝叶斯模型选择时同时确定一个最优预测模型。我们的框架对于理解气候变化下的种群动态很重要,并且在做出收获和栖息地管理决策方面有直接应用。

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