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增强子:等待合适的启动子。

Enhancers: holding out for the right promoter.

作者信息

Lorberbaum David S, Barolo Scott

机构信息

Department of Cell and Developmental Biology and Program in Cellular and Molecular Biology, University of Michigan Medical School, Ann Arbor, MI 48109, USA.

Department of Cell and Developmental Biology and Program in Cellular and Molecular Biology, University of Michigan Medical School, Ann Arbor, MI 48109, USA.

出版信息

Curr Biol. 2015 Mar 30;25(7):R290-3. doi: 10.1016/j.cub.2015.01.039.

DOI:10.1016/j.cub.2015.01.039
PMID:25829016
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC4824198/
Abstract

Some transcriptional enhancers work best with one type of promoter, while ignoring others. How widespread is such specificity across the genome? A new study finds that, in a fair fight, most enhancers prefer to activate promoters resembling those of their parent genes.

摘要

一些转录增强子与一种启动子配合效果最佳,而对其他启动子则不予理会。这种特异性在全基因组中普遍程度如何?一项新研究发现,在公平竞争的情况下,大多数增强子更倾向于激活与其亲本基因的启动子相似的启动子。

相似文献

1
Enhancers: holding out for the right promoter.增强子:等待合适的启动子。
Curr Biol. 2015 Mar 30;25(7):R290-3. doi: 10.1016/j.cub.2015.01.039.
2
Enhancer trafficking: free throws and three-pointers.增强子转位:自由球和三分球。
Dev Cell. 2015 Jan 26;32(2):135-7. doi: 10.1016/j.devcel.2015.01.006.
3
Enhancer-core-promoter specificity separates developmental and housekeeping gene regulation.增强子-核心启动子特异性区分发育基因和管家基因的调控。
Nature. 2015 Feb 26;518(7540):556-9. doi: 10.1038/nature13994. Epub 2014 Dec 15.
4
Two promoters integrate multiple enhancer inputs to drive wild-type knirps expression in the Drosophila melanogaster embryo.两个启动子整合多个增强子输入,以在黑腹果蝇胚胎中驱动野生型 knirps 的表达。
Genetics. 2021 Dec 10;219(4). doi: 10.1093/genetics/iyab154.
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Enhancer choice in cis and in trans in Drosophila melanogaster: role of the promoter.黑腹果蝇中顺式和反式增强子的选择:启动子的作用
Genetics. 2004 Aug;167(4):1739-47. doi: 10.1534/genetics.104.026955.
6
Enhancer loops appear stable during development and are associated with paused polymerase.增强子环在发育过程中似乎很稳定,并且与暂停的聚合酶有关。
Nature. 2014 Aug 7;512(7512):96-100. doi: 10.1038/nature13417. Epub 2014 Jul 2.
7
A novel promoter-tethering element regulates enhancer-driven gene expression at the bithorax complex in the Drosophila embryo.一种新型的启动子连接元件在果蝇胚胎的双胸复合体中调节增强子驱动的基因表达。
Development. 2008 Jan;135(1):123-31. doi: 10.1242/dev.010744. Epub 2007 Nov 28.
8
Transcription start site analysis reveals widespread divergent transcription in D. melanogaster and core promoter-encoded enhancer activities.转录起始位点分析揭示了 D. melanogaster 中的广泛分歧转录和核心启动子编码增强子活性。
Nucleic Acids Res. 2018 Jun 20;46(11):5455-5469. doi: 10.1093/nar/gky244.
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Developmental and housekeeping transcriptional programs display distinct modes of enhancer-enhancer cooperativity in Drosophila.发育和管家转录程序在果蝇中表现出不同的增强子-增强子合作模式。
Nat Commun. 2024 Oct 3;15(1):8584. doi: 10.1038/s41467-024-52921-2.
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2
Clustered and diverse transcription factor binding underlies cell type specificity of enhancers for housekeeping genes.成簇和多样化的转录因子结合为管家基因增强子的细胞类型特异性奠定了基础。
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Chromatin accessibility and regulatory vocabulary across indicine cattle tissues.猪各类组织中的染色质可及性和调控词汇。
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An ensemble of regulatory elements controls Runx3 spatiotemporal expression in subsets of dorsal root ganglia proprioceptive neurons.一组调控元件控制Runx3在背根神经节本体感觉神经元亚群中的时空表达。
Genes Dev. 2016 Dec 1;30(23):2607-2622. doi: 10.1101/gad.291484.116.
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Role of Homothorax in region specific regulation of Deformed in embryonic neuroblasts.同胸蛋白在胚胎神经母细胞中对变形蛋白区域特异性调控中的作用。
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本文引用的文献

1
Enhancer-core-promoter specificity separates developmental and housekeeping gene regulation.增强子-核心启动子特异性区分发育基因和管家基因的调控。
Nature. 2015 Feb 26;518(7540):556-9. doi: 10.1038/nature13994. Epub 2014 Dec 15.
2
Looping back to leap forward: transcription enters a new era.回溯以飞跃:转录进入新纪元。
Cell. 2014 Mar 27;157(1):13-25. doi: 10.1016/j.cell.2014.02.009.
3
Transcriptional enhancers: from properties to genome-wide predictions.转录增强子:从特性到全基因组预测。
Nat Rev Genet. 2014 Apr;15(4):272-86. doi: 10.1038/nrg3682. Epub 2014 Mar 11.
4
Perspectives on the RNA polymerase II core promoter.RNA聚合酶II核心启动子的观点。
Wiley Interdiscip Rev Dev Biol. 2012 Jan-Feb;1(1):40-51. doi: 10.1002/wdev.21. Epub 2011 Dec 6.
5
Genome-wide quantitative enhancer activity maps identified by STARR-seq.STARR-seq 鉴定的全基因组定量增强子活性图谱。
Science. 2013 Mar 1;339(6123):1074-7. doi: 10.1126/science.1232542. Epub 2013 Jan 17.
6
The NSL complex regulates housekeeping genes in Drosophila.NSL 复合物在果蝇中调节管家基因。
PLoS Genet. 2012;8(6):e1002736. doi: 10.1371/journal.pgen.1002736. Epub 2012 Jun 14.
7
The MOF-containing NSL complex associates globally with housekeeping genes, but activates only a defined subset.含 MOF 的 NSL 复合物与管家基因全局性地结合,但仅激活特定的子集。
Nucleic Acids Res. 2012 Feb;40(4):1509-22. doi: 10.1093/nar/gkr869. Epub 2011 Oct 27.
8
Motif composition, conservation and condition-specificity of single and alternative transcription start sites in the Drosophila genome.果蝇基因组中单转录起始位点和替代转录起始位点的基序组成、保守性和条件特异性。
Genome Biol. 2009;10(7):R73. doi: 10.1186/gb-2009-10-7-r73. Epub 2009 Jul 9.
9
Positional bias of general and tissue-specific regulatory motifs in mouse gene promoters.小鼠基因启动子中一般和组织特异性调控基序的位置偏向性
BMC Genomics. 2007 Dec 13;8:459. doi: 10.1186/1471-2164-8-459.
10
RNA polymerase stalling at developmental control genes in the Drosophila melanogaster embryo.果蝇胚胎中发育控制基因处的RNA聚合酶停滞
Nat Genet. 2007 Dec;39(12):1512-6. doi: 10.1038/ng.2007.26. Epub 2007 Nov 11.