丰臣假单胞菌KF710的基因组草图序列，这是一种从联苯污染土壤中分离出的多氯联苯降解细菌。
Draft Genome Sequence of Pseudomonas toyotomiensis KF710, a Polychlorinated Biphenyl-Degrading Bacterium Isolated from Biphenyl-Contaminated Soil.
作者信息
Watanabe Takahito, Yamazoe Atsushi, Hosoyama Akira, Fujihara Hidehiko, Suenaga Hikaru, Hirose Jun, Futagami Taiki, Goto Masatoshi, Kimura Nobutada, Furukawa Kensuke
机构信息
Research Institute for Sustainable Humanosphere, Kyoto University, Uji, Kyoto, Japan.
Biological Resource Center, National Institute of Technology and Evaluation (NITE), Shibuya-ku, Tokyo, Japan.
出版信息
Genome Announc. 2015 Apr 2;3(2):e00223-15. doi: 10.1128/genomeA.00223-15.
Abstract
Pseudomonas toyotomiensis KF710 utilizes biphenyl and degrades polychlorinated biphenyls (PCBs). Here, we report the genome sequence of the KF710 strain, consisting of 5,596,721 bp with 5,155 coding sequences. The biphenyl catabolic genes were almost identical to those of Pseudomonas pseudoalcaligenes KF707, one of the most well-characterized biphenyl-utilizing strains.
摘要
丰臣假单胞菌KF710能够利用联苯并降解多氯联苯（PCBs）。在此，我们报道了KF710菌株的基因组序列，其由5,596,721个碱基对组成，含有5,155个编码序列。该联苯分解代谢基因与假产碱假单胞菌KF707（最具特征的联苯利用菌株之一）的基因几乎相同。
相似文献
1
Draft Genome Sequence of Pseudomonas toyotomiensis KF710, a Polychlorinated Biphenyl-Degrading Bacterium Isolated from Biphenyl-Contaminated Soil.丰臣假单胞菌KF710的基因组草图序列，这是一种从联苯污染土壤中分离出的多氯联苯降解细菌。
Genome Announc. 2015 Apr 2;3(2):e00223-15. doi: 10.1128/genomeA.00223-15.
2
Draft Genome Sequence of Pseudomonas abietaniphila KF701 (NBRC110664), a Polychlorinated Biphenyl-Degrading Bacterium Isolated from Biphenyl-Contaminated Soil.从联苯污染土壤中分离出的多氯联苯降解细菌阿比蒂假单胞菌KF701（NBRC110664）的基因组序列草图
Genome Announc. 2015 May 14;3(3):e00473-15. doi: 10.1128/genomeA.00473-15.
3
Draft Genome Sequence of Pseudomonas aeruginosa KF702 (NBRC 110665), a Polychlorinated Biphenyl-Degrading Bacterium Isolated from Biphenyl-Contaminated Soil.从联苯污染土壤中分离出的多氯联苯降解菌铜绿假单胞菌KF702（NBRC 110665）的基因组序列草图
Genome Announc. 2015 May 21;3(3):e00517-15. doi: 10.1128/genomeA.00517-15.
4
Draft Genome Sequence of the Polychlorinated Biphenyl-Degrading Bacterium Pseudomonas putida KF703 (NBRC 110666) Isolated from Biphenyl-Contaminated Soil.从联苯污染土壤中分离出的多氯联苯降解细菌恶臭假单胞菌KF703（NBRC 110666）的基因组序列草图
Genome Announc. 2015 Mar 19;3(2):e00142-15. doi: 10.1128/genomeA.00142-15.
5
Complete Genome Sequence of the Polychlorinated Biphenyl-Degrading Bacterium KF715 (NBRC 110667) Isolated from Biphenyl-Contaminated Soil.从联苯污染土壤中分离出的多氯联苯降解菌KF715（NBRC 110667）的全基因组序列
Genome Announc. 2017 Feb 16;5(7):e01624-16. doi: 10.1128/genomeA.01624-16.
6
Draft Genome Sequence of Pseudomonas abietaniphila KF717 (NBRC 110669), Isolated from Biphenyl-Contaminated Soil in Japan.从日本联苯污染土壤中分离得到的阿比蒂假单胞菌KF717（NBRC 110669）的基因组序列草图
Genome Announc. 2015 Mar 19;3(2):e00059-15. doi: 10.1128/genomeA.00059-15.
7
Use of potassium tellurite for testing the survival and viability of Pseudomonas pseudoalcaligenes KF707 in soil microcosms contaminated with polychlorinated biphenyls.使用亚碲酸钾测试在被多氯联苯污染的土壤微观世界中，假产碱假单胞菌KF707的存活情况和活力。
Res Microbiol. 2002 Jul-Aug;153(6):353-60. doi: 10.1016/s0923-2508(02)01334-7.
8
Draft Genome Sequence of the Polychlorinated Biphenyl-Degrading Bacterium Cupriavidus basilensis KF708 (NBRC 110671) Isolated from Biphenyl-Contaminated Soil.从联苯污染土壤中分离出的多氯联苯降解细菌罗尔斯通氏菌（Cupriavidus basilensis）KF708（NBRC 110671）的基因组序列草图
Genome Announc. 2015 Mar 19;3(2):e00143-15. doi: 10.1128/genomeA.00143-15.
9
Pseudomonas furukawaii sp. nov., a polychlorinated biphenyl-degrading bacterium isolated from biphenyl-contaminated soil in Japan.弗鲁卡瓦伊假单胞菌新种，一种从日本受联苯污染土壤中分离出的多氯联苯降解细菌。
Int J Syst Evol Microbiol. 2018 May;68(5):1429-1435. doi: 10.1099/ijsem.0.002670. Epub 2018 Mar 29.
10
Draft Genome Sequence of Cupriavidus pauculus Strain KF709, a Biphenyl-Utilizing Bacterium Isolated from Biphenyl-Contaminated Soil.从联苯污染土壤中分离出的一株利用联苯的细菌——保罗贪铜菌菌株KF709的基因组序列草图
Genome Announc. 2015 Mar 26;3(2):e00222-15. doi: 10.1128/genomeA.00222-15.
引用本文的文献
1
Performance and Application of 16S rRNA Gene Cycle Sequencing for Routine Identification of Bacteria in the Clinical Microbiology Laboratory.16S rRNA 基因测序在临床微生物实验室常规细菌鉴定中的性能和应用。
Clin Microbiol Rev. 2020 Sep 9;33(4). doi: 10.1128/CMR.00053-19. Print 2020 Sep 16.
2
Biphenyl/PCB Degrading Genes of Ten Bacterial Strains Isolated from Biphenyl-Contaminated Soil in Kitakyushu, Japan: Comparative and Dynamic Features as Integrative Conjugative Elements (ICEs).日本北九州地区受联苯污染土壤中分离的 10 株细菌的联苯/多氯联苯降解基因：作为整合性接合元件（ICEs）的比较和动态特征。
Genes (Basel). 2019 May 27;10(5):404. doi: 10.3390/genes10050404.
3
Draft Genome Sequence of the Polychlorinated Biphenyl-Degrading Bacterium Pseudomonas stutzeri KF716 (NBRC 110668).多氯联苯降解菌施氏假单胞菌KF716（NBRC 110668）的基因组序列草图
Genome Announc. 2015 Oct 22;3(5):e01215-15. doi: 10.1128/genomeA.01215-15.
本文引用的文献
1
Microbial degradation of polychlorinated biphenyls: biochemical and molecular features.多氯联苯的微生物降解：生化与分子特征
J Biosci Bioeng. 2008 May;105(5):433-49. doi: 10.1263/jbb.105.433.
2
The RAST Server: rapid annotations using subsystems technology.RAST服务器：使用子系统技术进行快速注释。
BMC Genomics. 2008 Feb 8;9:75. doi: 10.1186/1471-2164-9-75.
3
Identification, isolation, and analysis of a gene cluster involved in iron acquisition by Pseudomonas mendocina ymp.门多萨假单胞菌ymp中参与铁获取的基因簇的鉴定、分离及分析
Biometals. 2008 Jun;21(3):353-66. doi: 10.1007/s10534-007-9124-5. Epub 2007 Dec 6.
4
The role of mobile genetic elements in bacterial adaptation to xenobiotic organic compounds.移动遗传元件在细菌对外源有机化合物适应中的作用。
Curr Opin Biotechnol. 2003 Jun;14(3):262-9. doi: 10.1016/s0958-1669(03)00066-1.
5
A 90-kilobase conjugative chromosomal element coding for biphenyl and salicylate catabolism in Pseudomonas putida KF715.一个90千碱基的接合型染色体元件，编码恶臭假单胞菌KF715中对联苯和水杨酸盐的分解代谢。
J Bacteriol. 2000 Apr;182(7):1949-55. doi: 10.1128/JB.182.7.1949-1955.2000.
6
Molecular genetics and evolutionary relationship of PCB-degrading bacteria.多氯联苯降解菌的分子遗传学与进化关系
Biodegradation. 1994 Dec;5(3-4):289-300. doi: 10.1007/BF00696466.
7
Molecular relationship of chromosomal genes encoding biphenyl/polychlorinated biphenyl catabolism: some soil bacteria possess a highly conserved bph operon.编码联苯/多氯联苯分解代谢的染色体基因的分子关系：一些土壤细菌拥有高度保守的bph操纵子。
J Bacteriol. 1989 Oct;171(10):5467-72. doi: 10.1128/jb.171.10.5467-5472.1989.
8
Analysis of bph operon from the polychlorinated biphenyl-degrading strain of Pseudomonas pseudoalcaligenes KF707.
J Biol Chem. 1992 Mar 5;267(7):4844-53.
Zotero 插件