Beaz-Hidalgo R, Latif-Eugenín F, Hossain M J, Berg K, Niemi R M, Rapala J, Lyra C, Liles M R, Figueras M J
Unitat de Microbiologia, Departament de Ciènces Médiques Bàsiques, Facultat de Medicina i Ciències de la Salut, IISPV, Universitat Rovira i Virgili, Reus, Spain.
Department of Biological Sciences, Auburn University, Auburn, AL, United States.
Syst Appl Microbiol. 2015 May;38(3):161-8. doi: 10.1016/j.syapm.2015.02.005. Epub 2015 Mar 20.
Three groups of Aeromonas strains isolated from Finland lakes experiencing cyanobacterial blooms could not be assigned to any known species of this genus on the basis of 16S rRNA and rpoD gene sequences. The Multilocus Phylogenetic Analysis (MLPA) of the concatenated sequence of seven genes (gyrB, rpoD, recA, dnaJ, gyrA, dnaX and atpD; 4093bp) showed that the three groups of strains did not cluster with any known Aeromonas spp. and formed three independent lineages. This was confirmed by performing the analysis with their closest relatives using 15 genes (the latter 7 and cpn60, dnaK, gltA, mdh, radA, rpoB, tsf, zipA; 8751bp). Furthermore, ANI results between the genomes of the type strains of the three potential new species and those of their close relatives were all <96% which is the previously proposed cutoff value for differentiating species within this genus. The in silico DDH values of the three type strains of the new species also showed a similarity<70% with the most closely related species indicating they belong to different taxa. The three groups of strains could be differentiated from each other and from other known Aeromonas species on the basis of several phenotypic characters. This polyphasic study revealed that the 3 groups of strains represent 3 novel Aeromonas species for which the names Aeromonas aquatica sp. nov. (type strain AE235T=CECT 8025T=LMG 26712T), Aeromonas finlandiensis sp. nov. (type strain 4287DT=CECT 8028T=LMG 26709T) and Aeromonas lacus sp. nov. (type strain AE122T=CECT 8024T=LMG 26710T) are proposed.
从芬兰湖泊中分离出的三组气单胞菌菌株,这些湖泊正经历蓝藻水华现象,基于16S rRNA和rpoD基因序列,无法将其归为该属的任何已知物种。对七个基因(gyrB、rpoD、recA、dnaJ、gyrA、dnaX和atpD;4093bp)的串联序列进行多位点系统发育分析(MLPA)表明,这三组菌株未与任何已知的气单胞菌属物种聚类,而是形成了三个独立的谱系。使用15个基因(后7个基因以及cpn60、dnaK、gltA、mdh、radA、rpoB、tsf、zipA;8751bp)对它们的近亲进行分析,证实了这一点。此外,这三个潜在新物种的模式菌株基因组与它们近亲的基因组之间的ANI结果均<96%,这是先前提出的区分该属内物种的截止值。新物种的三个模式菌株的电子DDH值与最密切相关物种的相似性也<70%,表明它们属于不同的分类单元。根据几个表型特征,可以将这三组菌株相互区分,并与其他已知的气单胞菌物种区分开来。这项多相研究表明,这三组菌株代表了三个新的气单胞菌物种,分别命名为水生气单胞菌新种(模式菌株AE235T=CECT 8025T=LMG 26712T)、芬兰气单胞菌新种(模式菌株4287DT=CECT 8028T=LMG 26709T)和气单胞菌湖新种(模式菌株AE122T=CECT 8024T=LMG 26710T)。