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SPAdes: a new genome assembly algorithm and its applications to single-cell sequencing.SPAdes：一种新的基因组组装算法及其在单细胞测序中的应用
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antiSMASH: rapid identification, annotation and analysis of secondary metabolite biosynthesis gene clusters in bacterial and fungal genome sequences.antiSMASH：快速识别、注释和分析细菌和真菌基因组序列中次生代谢产物生物合成基因簇。
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分别来自辣椒（鸟眼辣椒）和中国辣椒（黄灯笼辣椒）的安全芽孢杆菌RIT372和栖稻假单胞菌RIT370的全基因组测序与注释

Whole-Genome Sequencing and Annotation of Bacillus safensis RIT372 and Pseudomonas oryzihabitans RIT370 from Capsicum annuum (Bird's Eye Chili) and Capsicum chinense (Yellow Lantern Chili), Respectively.

作者信息

Gan Huan You, Gan Han Ming, Savka Michael A, Triassi Alexander J, Wheatley Matthew S, Naqvi Kubra F, Foxhall Taylor E, Anauo Michael J, Baldwin Mariah L, Burkhardt Russell N, O'Bryon Isabelle G, Dailey Lucas K, Busairi Nurfatini Idayu, Keith Robert C, Khair Megat Hazmah Megat Mazhar, Rasul Muhammad Zamir Mohd, Rosdi Nur Aiman Mohd, Mountzouros James R, Rhoads Aleigha C, Selochan Melissa A, Tautanov Timur B, Polter Steven J, Marks Kayla D, Caraballo Alexander A, Hudson André O

机构信息

Thomas H. Gosnell School of Life Sciences, Rochester Institute of Technology, Rochester, New York, USA.

The School of Chemistry and Materials Science, Rochester Institute of Technology, Rochester, New York, USA.

出版信息

Genome Announc. 2015 Apr 16;3(2):e00288-15. doi: 10.1128/genomeA.00288-15.

DOI:10.1128/genomeA.00288-15
PMID:25883290
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC4400433/
Abstract

Here, we report the genome sequences of Bacillus safensis RIT372 and Pseudomonas oryzihabitans RIT370 from Capsicum spp. Annotation revealed gene clusters for the synthesis of bacilysin, lichensin, and bacillibactin and sporulation killing factor (skfA) in Bacillus safensis RIT372 and turnerbactin and carotenoid in Pseudomonas oryzihabitans RIT370.

摘要

在此，我们报告了来自辣椒属植物的安全芽孢杆菌RIT372和栖稻假单胞菌RIT370的基因组序列。注释显示，安全芽孢杆菌RIT372中存在用于合成杆菌溶素、地衣多糖和杆菌铁载体以及芽孢形成杀伤因子（skfA）的基因簇，而栖稻假单胞菌RIT370中存在特纳菌素和类胡萝卜素的基因簇。