• 文献检索
  • 文档翻译
  • 深度研究
  • 学术资讯
  • Suppr Zotero 插件Zotero 插件
  • 邀请有礼
  • 套餐&价格
  • 历史记录
应用&插件
Suppr Zotero 插件Zotero 插件浏览器插件Mac 客户端Windows 客户端微信小程序
定价
高级版会员购买积分包购买API积分包
服务
文献检索文档翻译深度研究API 文档MCP 服务
关于我们
关于 Suppr公司介绍联系我们用户协议隐私条款
关注我们

Suppr 超能文献

核心技术专利:CN118964589B侵权必究
粤ICP备2023148730 号-1Suppr @ 2026

文献检索

告别复杂PubMed语法,用中文像聊天一样搜索,搜遍4000万医学文献。AI智能推荐,让科研检索更轻松。

立即免费搜索

文件翻译

保留排版,准确专业,支持PDF/Word/PPT等文件格式,支持 12+语言互译。

免费翻译文档

深度研究

AI帮你快速写综述,25分钟生成高质量综述,智能提取关键信息,辅助科研写作。

立即免费体验

通过(19)F多组分横向弛豫色散分析评估色氨酸-白蛋白溶液中的化学交换

Assessment of chemical exchange in tryptophan-albumin solution through (19)F multicomponent transverse relaxation dispersion analysis.

作者信息

Lin Ping-Chang

机构信息

Department of Radiology, College of Medicine, Howard University, 2041 Georgia Ave, N.W., Washington, DC, 20060, USA,

出版信息

J Biomol NMR. 2015 Jun;62(2):121-7. doi: 10.1007/s10858-015-9929-4. Epub 2015 Apr 22.

DOI:10.1007/s10858-015-9929-4
PMID:25900068
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC4452398/
Abstract

A number of NMR methods possess the capability of probing chemical exchange dynamics in solution. However, certain drawbacks limit the applications of these NMR approaches, particularly, to a complex system. Here, we propose a procedure that integrates the regularized nonnegative least squares (NNLS) analysis of multiexponential T2 relaxation into Carr-Purcell-Meiboom-Gill (CPMG) relaxation dispersion experiments to probe chemical exchange in a multicompartmental system. The proposed procedure was validated through analysis of (19)F T2 relaxation data of 6-fluoro-DL-tryptophan in a two-compartment solution with and without bovine serum albumin. Given the regularized NNLS analysis of a T2 relaxation curve acquired, for example, at the CPMG frequency υ CPMG  = 125, the nature of two distinct peaks in the associated T2 distribution spectrum indicated 6-fluoro-DL-tryptophan either retaining the free state, with geometric mean */multiplicative standard deviation (MSD) = 1851.2 ms */1.51, or undergoing free/albumin-bound interconversion, with geometric mean */MSD = 236.8 ms */1.54, in the two-compartment system. Quantities of the individual tryptophan species were accurately reflected by the associated T2 peak areas, with an interconversion state-to-free state ratio of 0.45 ± 0.11. Furthermore, the CPMG relaxation dispersion analysis estimated the exchange rate between the free and albumin-bound states in this fluorinated tryptophan analog and the corresponding dissociation constant of the fluorinated tryptophan-albumin complex in the chemical-exchanging, two-compartment system.

摘要

许多核磁共振(NMR)方法具备探测溶液中化学交换动力学的能力。然而,某些缺点限制了这些NMR方法的应用,尤其是在复杂体系中的应用。在此,我们提出一种程序,该程序将多指数T2弛豫的正则化非负最小二乘法(NNLS)分析整合到Carr-Purcell-Meiboom-Gill(CPMG)弛豫色散实验中,以探测多隔室系统中的化学交换。通过分析6-氟-DL-色氨酸在有和没有牛血清白蛋白的双隔室溶液中的(19)F T2弛豫数据,验证了所提出的程序。例如,对于在CPMG频率υCPMG = 125下采集的T2弛豫曲线进行正则化NNLS分析,相关T2分布谱中两个不同峰的性质表明,在双隔室系统中,6-氟-DL-色氨酸要么保持自由状态,几何平均值/乘性标准偏差(MSD)= 1851.2毫秒/1.51,要么经历自由/与白蛋白结合的相互转化,几何平均值/MSD = 236.8毫秒/1.54。各个色氨酸物种的数量由相关的T2峰面积准确反映,相互转化态与自由态的比率为0.45±0.11。此外,CPMG弛豫色散分析估计了这种氟化色氨酸类似物中自由态与白蛋白结合态之间的交换速率,以及在化学交换的双隔室系统中氟化色氨酸-白蛋白复合物的相应解离常数。

相似文献

1
Assessment of chemical exchange in tryptophan-albumin solution through (19)F multicomponent transverse relaxation dispersion analysis.通过(19)F多组分横向弛豫色散分析评估色氨酸-白蛋白溶液中的化学交换
J Biomol NMR. 2015 Jun;62(2):121-7. doi: 10.1007/s10858-015-9929-4. Epub 2015 Apr 22.
2
Probing microsecond time scale dynamics in proteins by methyl (1)H Carr-Purcell-Meiboom-Gill relaxation dispersion NMR measurements. Application to activation of the signaling protein NtrC(r).通过甲基 (1)H Carr-Purcell-Meiboom-Gill 弛豫分散 NMR 测量研究蛋白质中的微秒时间尺度动力学。在信号蛋白 NtrC(r)的激活中的应用。
J Am Chem Soc. 2010 Dec 1;132(47):17004-14. doi: 10.1021/ja107410x. Epub 2010 Nov 8.
3
Chemical exchange effects during refocusing pulses in constant-time CPMG relaxation dispersion experiments.恒时CPMG弛豫色散实验中重聚焦脉冲期间的化学交换效应。
J Biomol NMR. 2009 Sep;45(1-2):207-16. doi: 10.1007/s10858-009-9344-9. Epub 2009 Jul 19.
4
General Expressions for Carr-Purcell-Meiboom-Gill Relaxation Dispersion for N-Site Chemical Exchange.N 位点化学交换的 Carr-Purcell-Meiboom-Gill 弛豫色散的通用表达式。
Biochemistry. 2018 Aug 7;57(31):4753-4763. doi: 10.1021/acs.biochem.8b00370. Epub 2018 Jul 30.
5
CPMG relaxation dispersion.Carr-Purcell-Meiboom-Gill(CPMG)弛豫色散
Methods Mol Biol. 2014;1084:29-49. doi: 10.1007/978-1-62703-658-0_2.
6
A (15)N CPMG relaxation dispersion experiment more resistant to resonance offset and pulse imperfection.一种对共振偏移和脉冲缺陷更具抗性的(15)N CPMG弛豫色散实验。
J Magn Reson. 2015 Aug;257:1-7. doi: 10.1016/j.jmr.2015.05.003. Epub 2015 May 21.
7
Simultaneous determination of fast and slow dynamics in molecules using extreme CPMG relaxation dispersion experiments.使用极端CPMG弛豫色散实验同时测定分子中的快速和慢速动力学。
J Biomol NMR. 2018 Jan;70(1):1-9. doi: 10.1007/s10858-017-0155-0. Epub 2017 Nov 29.
8
A methyl-TROSY based C relaxation dispersion NMR experiment for studies of chemical exchange in proteins.基于甲基-TROSY 的 C 弛豫分散 NMR 实验可用于研究蛋白质中的化学交换。
J Biomol NMR. 2023 Jun;77(3):83-91. doi: 10.1007/s10858-023-00413-8. Epub 2023 Apr 25.
9
Measuring the signs of the methyl H chemical shift differences between major and 'invisible' minor protein conformational states using methyl H multi-quantum spectroscopy.使用甲基氢多量子光谱法测量主要和“不可见”次要蛋白质构象状态之间甲基氢化学位移差异的信号。
J Biomol NMR. 2018 Mar;70(3):187-202. doi: 10.1007/s10858-018-0171-8. Epub 2018 Mar 21.
10
Application of geometric approximation to the CPMG experiment: Two- and three-site exchange.几何近似在CPMG实验中的应用:双位点和三位点交换
J Magn Reson. 2017 Apr;277:8-14. doi: 10.1016/j.jmr.2017.01.022. Epub 2017 Feb 4.

引用本文的文献

1
Insights Into the Micelle-Induced β-Hairpin-to-α-Helix Transition of a LytA-Derived Peptide by Photo-CIDNP Spectroscopy.胶束诱导 LytA 衍生肽的β发夹到α螺旋构象转变的光 CIDNP 光谱研究。
Int J Mol Sci. 2021 Jun 22;22(13):6666. doi: 10.3390/ijms22136666.
2
Label-free NMR-based dissociation kinetics determination.基于无标记核磁共振的解离动力学测定。
J Biomol NMR. 2017 Dec;69(4):229-235. doi: 10.1007/s10858-017-0150-5. Epub 2017 Nov 16.
3
Measurement of Ligand-Target Residence Times by H Relaxation Dispersion NMR Spectroscopy.通过氢弛豫色散核磁共振波谱法测量配体-靶点停留时间
J Med Chem. 2016 Dec 8;59(23):10788-10793. doi: 10.1021/acs.jmedchem.6b01110. Epub 2016 Nov 29.

本文引用的文献

1
Improved specificity of cartilage matrix evaluation using multiexponential transverse relaxation analysis applied to pathomimetically degraded cartilage.应用多指数横向弛豫分析对病理模拟降解软骨进行评估,提高软骨基质评估的特异性。
NMR Biomed. 2011 Dec;24(10):1286-94. doi: 10.1002/nbm.1690. Epub 2011 Apr 5.
2
Probing RNA dynamics via longitudinal exchange and CPMG relaxation dispersion NMR spectroscopy using a sensitive 13C-methyl label.通过使用灵敏的 13C-甲基标记物,通过纵向交换和 CPMG 弛豫色散 NMR 光谱学探测 RNA 动力学。
Nucleic Acids Res. 2011 May;39(10):4340-51. doi: 10.1093/nar/gkq1361. Epub 2011 Jan 19.
3
An introduction to NMR-based approaches for measuring protein dynamics.基于核磁共振的蛋白质动力学测量方法介绍。
Biochim Biophys Acta. 2011 Aug;1814(8):942-68. doi: 10.1016/j.bbapap.2010.10.012. Epub 2010 Nov 6.
4
NMR spectroscopy brings invisible protein states into focus.NMR 光谱学将不可见的蛋白质状态聚焦。
Nat Chem Biol. 2009 Nov;5(11):808-14. doi: 10.1038/nchembio.238.
5
Multicomponent T2 relaxation analysis in cartilage.软骨中的多成分T2弛豫分析
Magn Reson Med. 2009 Apr;61(4):803-9. doi: 10.1002/mrm.21926.
6
Extensive backbone dynamics in the GCAA RNA tetraloop analyzed using 13C NMR spin relaxation and specific isotope labeling.利用13C NMR自旋弛豫和特定同位素标记分析GCAA RNA四环中的广泛主链动力学。
J Am Chem Soc. 2008 Dec 10;130(49):16757-69. doi: 10.1021/ja805759z.
7
Long T2 water in multiple sclerosis: what else can we learn from multi-echo T2 relaxation?多发性硬化症中的长T2水:我们还能从多回波T2弛豫中了解到什么?
J Neurol. 2007 Nov;254(11):1579-87. doi: 10.1007/s00415-007-0595-7. Epub 2007 Sep 4.
8
Faithful estimation of dynamics parameters from CPMG relaxation dispersion measurements.通过CPMG弛豫色散测量对动力学参数进行准确估计。
J Magn Reson. 2006 May;180(1):93-104. doi: 10.1016/j.jmr.2006.01.010. Epub 2006 Feb 3.
9
Multiple-site exchange in proteins studied with a suite of six NMR relaxation dispersion experiments: an application to the folding of a Fyn SH3 domain mutant.使用一组六个核磁共振弛豫色散实验研究蛋白质中的多位点交换:应用于Fyn SH3结构域突变体的折叠
J Am Chem Soc. 2005 Nov 9;127(44):15602-11. doi: 10.1021/ja054550e.
10
Determination of protein-ligand binding affinity by NMR: observations from serum albumin model systems.通过核磁共振确定蛋白质-配体结合亲和力:来自血清白蛋白模型系统的观察结果
Magn Reson Chem. 2005 Jun;43(6):463-70. doi: 10.1002/mrc.1574.