Kenny Nathan J, Shen Xin, Chan Thomas T H, Wong Nicola W Y, Chan Ting Fung, Chu Ka Hou, Lam Hon-Ming, Hui Jerome H L
Simon F.S. Li Marine Science Laboratory of School of Life Sciences and Center of Soybean Research of State Key Laboratory of Agrobiotechnology, The Chinese University of Hong Kong, Shatin, Hong Kong.
Center of Soybean Research of State Key Laboratory of Agrobiotechnology, The Chinese University of Hong Kong, Shatin, Hong Kong.
Genome Biol Evol. 2015 Apr 21;7(5):1280-95. doi: 10.1093/gbe/evv070.
The increasing availability of genomic information from the Arthropoda continues to revolutionize our understanding of the biology of this most diverse animal phylum. However, our sampling of arthropod diversity remains uneven, and key clade such as the Myriapoda are severely underrepresented. Here we present the genome of the cosmopolitanly distributed Rusty Millipede Trigoniulus corallinus, which represents the first diplopod genome to be published, and the second example from the Myriapoda as a whole. This genomic resource contains the majority of core eukaryotic genes (94.3%), and key transcription factor classes that were thought to be lost in the Ecdysozoa. Mitochondrial genome and gene family (transcription factor, Dscam, circadian clock-driving protein, odorant receptor cassette, bioactive compound, and cuticular protein) analyses were also carried out to shed light on their states in the Diplopoda and Myriapoda. The ready availability of T. corallinus recommends it as a new model for evolutionary developmental biology, and the data set described here will be of widespread utility in investigating myriapod and arthropod genomics and evolution.
节肢动物基因组信息的日益丰富,不断革新着我们对这个最为多样的动物门类生物学的理解。然而,我们对节肢动物多样性的采样仍然不均衡,像多足纲这样的关键分支代表性严重不足。在此,我们展示了广泛分布的锈色马陆Trigoniulus corallinus的基因组,这是首个公布的倍足纲基因组,也是整个多足纲的第二个实例。该基因组资源包含了大多数核心真核基因(94.3%),以及一些被认为在蜕皮动物中丢失的关键转录因子类别。我们还进行了线粒体基因组和基因家族(转录因子、Dscam、昼夜节律驱动蛋白、气味受体盒、生物活性化合物和表皮蛋白)分析,以阐明它们在倍足纲和多足纲中的状态。锈色马陆易于获取,推荐将其作为进化发育生物学的新模型,此处描述的数据集在研究多足纲和节肢动物基因组学及进化方面将具有广泛的用途。