Research Center for Biodiversity Conservation and Biosafety/State Environmental Protection Scientific Observation and Research Station for Ecological Environment of Wuyi Mountains/Biodiversity Comprehensive Observation Station for Wuyi Mountains/State Environmental Protection Key Laboratory on Biosafety, Nanjing Institute of Environmental Sciences, Ministry of Ecology and Environment of China, Nanjing, 210042, China.
College of Plant Health and Medicine, Qingdao Agricultural University, Qingdao, 266109, China.
Sci Rep. 2024 Mar 30;14(1):7541. doi: 10.1038/s41598-024-57421-3.
Diplopoda is one of the most diverse and important groups of soil arthropods, but little research has been done on their phylogenetic relationship and evolution. Here, we sequenced and annotated the complete mitochondrial genomes of Spirobolus grahami. The total mitogenome of S. grahami was typical circular, double-stranded molecules, with 14,875 bp in length, including 13 protein-coding genes, 22 tRNAs, two rRNAs, and one control region. Base composition analysis suggested that the mitochondrial sequences were biased toward A and T, with A + T content of 58.68%. The mitogenomes of S. grahami exhibited negative AT and positive GC skews. Most of the 13 PCGs had ATN as the start codon, except COX1 start with CGA, and most PCGs ended with the T stop codon. The dN/dS values for most PCGs were lower than 1, suggesting that purifying selection was likely the main driver of mitochondrial PCG evolution. Phylogenetic analyses based on 13 PCGs using BI and ML methods support the classification of genus Spirobolus and Tropostreptus. Glomeridesmus spelaeus is distantly related to the other Diplopoda species.
倍足纲是土壤节肢动物中最多样和最重要的类群之一,但对其系统发育关系和进化的研究甚少。本研究测定并注释了格拉米巨马陆(Spirobolus grahami)的完整线粒体基因组。S. grahami 的线粒体基因组全长为典型的环状双链分子,长度为 14875bp,包含 13 个蛋白编码基因、22 个 tRNA、2 个 rRNA 和 1 个控制区。碱基组成分析表明,线粒体序列偏向于 A 和 T,A+T 含量为 58.68%。S. grahami 的线粒体基因组表现出负的 AT 和正的 GC 倾斜。除了 COX1 以 CGA 作为起始密码子外,大多数 PCGs 以 ATN 作为起始密码子,大多数 PCGs 以 T 作为终止密码子结束。大多数 PCGs 的 dN/dS 值低于 1,表明纯化选择可能是线粒体 PCG 进化的主要驱动力。基于 BI 和 ML 方法的 13 个 PCGs 的系统发育分析支持了格拉米巨马陆属和 Tropostreptus 的分类。洞穴巨马陆(Glomeridesmus spelaeus)与其他倍足纲物种关系较远。