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基于库存的jsPISA中蛋白质寡聚状态检测

Stock-based detection of protein oligomeric states in jsPISA.

作者信息

Krissinel Eugene

机构信息

CCP4, Research Complex at Harwell, Didcot, OX11 0FA, UK

出版信息

Nucleic Acids Res. 2015 Jul 1;43(W1):W314-9. doi: 10.1093/nar/gkv314. Epub 2015 Apr 23.

Abstract

A new version of the popular software PISA for the analysis of macromolecular interfaces and identification of biological assemblies (complexes) from macromolecular crystal structures is presented. The new web server jsPISA has a substantially improved user interface, based on modern JavaScript technologies, and also new elements of analysis: assembly stock and interaction radar. The new elements help interpretation of PISA results in difficult and ambiguous cases, for example, when the oligomeric state depends on protein concentration, or when the biologically relevant interaction is weak and cannot be easily discriminated from superficial crystal contacts. jsPISA is maintained by CCP4 at http://www.ccp4.ac.uk/pisa. There are no login requirements for using the server.

摘要

本文介绍了流行软件PISA的新版本,该软件用于分析大分子界面并从大分子晶体结构中识别生物组装体(复合物)。新的网络服务器jsPISA基于现代JavaScript技术,具有大幅改进的用户界面以及新的分析元素:组装库和相互作用雷达。这些新元素有助于在复杂和不明确的情况下解读PISA结果,例如,当寡聚状态取决于蛋白质浓度时,或者当生物学相关相互作用较弱且难以与表面晶体接触区分开时。jsPISA由CCP4维护,网址为http://www.ccp4.ac.uk/pisa。使用该服务器无需登录。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a458/4489313/664a6089d6ed/gkv314fig1.jpg

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