Soto-Alonso G, Cruz-Medina J A, Caballero-Pérez J, Arvizu-Hernández I, Ávalos-Esparza L M, Cruz-Hernández A, Romero-Gómez S, Rodríguez A L, Pastrana-Martínez X, Fernández F, Loske A M, Campos-Guillén J
Facultad de Ciencias Naturales, Universidad Autónoma de Querétaro, Avenida de las Ciencias s/n, Querétaro, Qro. 76230, Mexico.
Facultad de Ingeniería, Universidad Autónoma de Querétaro, Cerro de las Campanas s/n, Querétaro, Qro. 76010, Mexico.
J Microbiol Methods. 2015 Jul;114:1-8. doi: 10.1016/j.mimet.2015.04.007. Epub 2015 Apr 23.
Genetic characterization of plasmids from bacterial strains provides insight about multidrug resistance. Ten wild type Escherichia coli (E. coli) strains isolated from cow fecal samples were characterized by their antibiotic resistance profile, plasmid patterns and three different identification methods. From one of the strains, a fertility factor-like plasmid was replicated using tandem shock wave-mediated transformation. Underwater shock waves with a positive pressure peak of up to approximately 40 MPa, followed by a pressure trough of approximately -19 MPa were generated using an experimental piezoelectric shock wave source. Three different shock wave energies and a fixed delay of 750 μs were used to study the relationship between energy and transformation efficiency (TE), as well as the influence of shock wave energy on the integrity of the plasmid. Our results showed that the mean shock wave-mediated TE and the integrity of the large plasmid (~70 kb) were reduced significantly at the energy levels tested. The sequencing analysis of the plasmid revealed a high identity to the pHK17a plasmid, including the replication system, which was similar to the plasmid incompatibility group FII. It also showed that it carried an extended spectrum beta-lactamase gene, ctx-m-14. Furthermore, diverse genes for the conjugative mechanism were identified. Our results may be helpful in improving methodologies for conjugative plasmid transfer and directly selecting the most interesting plasmids from environmental samples.
对细菌菌株中的质粒进行遗传特征分析有助于了解多重耐药性。从牛粪样本中分离出的10株野生型大肠杆菌(E. coli)菌株,通过其抗生素耐药谱、质粒图谱和三种不同的鉴定方法进行了特征分析。从其中一株菌株中,利用串联冲击波介导的转化方法复制了一种致育因子样质粒。使用实验性压电冲击波源产生了正压峰值高达约40 MPa、随后是约-19 MPa压力谷的水下冲击波。使用三种不同的冲击波能量和750 μs的固定延迟来研究能量与转化效率(TE)之间的关系,以及冲击波能量对质粒完整性的影响。我们的结果表明,在所测试的能量水平下,平均冲击波介导的TE和大质粒(约70 kb)的完整性显著降低。质粒的测序分析显示与pHK17a质粒具有高度同一性,包括复制系统,该复制系统与质粒不相容群FII相似。它还表明携带一个超广谱β-内酰胺酶基因ctx-m-14。此外,还鉴定了多种接合机制相关基因。我们的结果可能有助于改进接合性质粒转移的方法,并直接从环境样本中筛选出最具研究价值的质粒。