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针对以主动脉病变为特征的马凡综合征及类马凡综合征的新一代测序 panel 检测的临床应用

Clinical utility of a next generation sequencing panel assay for Marfan and Marfan-like syndromes featuring aortopathy.

作者信息

Wooderchak-Donahue Whitney, VanSant-Webb Chad, Tvrdik Tatiana, Plant Parker, Lewis Tracey, Stocks Jennifer, Raney Joshua A, Meyers Lindsay, Berg Alizabeth, Rope Alan F, Yetman Anji T, Bleyl Steven B, Mesley Rebecca, Bull David A, Collins R Thomas, Ojeda Mayra Martinez, Roberts Amy, Lacro Ronald, Woerner Audrey, Stoler Joan, Bayrak-Toydemir Pinar

机构信息

ARUP Institute for Clinical and Experimental Pathology, Salt Lake City, Utah.

Department of Pathology, University of Utah, Salt Lake City, Utah.

出版信息

Am J Med Genet A. 2015 Aug;167A(8):1747-57. doi: 10.1002/ajmg.a.37085. Epub 2015 May 5.

Abstract

Aortopathy can be defined as aortic dilation, aneurysm, dissection, and tortuosity. Familial aortopathy may occur secondary to fibrillin-1 (FBN1) mutations in the setting of Marfan syndrome, or may occur as a result of other genetic defects with different, but occasionally overlapping, phenotypes. Because of the phenotypic overlap and genetic heterogeneity of disorders featuring aortopathy, we developed a next generation sequencing (NGS) assay and comparative genomic hybridization (CGH) array to detect mutations in 10 genes that cause thoracic aortic aneurysms (TAAs). Here, we report on the clinical and molecular findings in 175 individuals submitted for aortopathy panel testing at ARUP laboratories. Ten genes associated with heritable aortopathies were targeted using hybridization capture prior to sequencing. NGS results were analyzed, and variants were confirmed using Sanger sequencing. Array CGH was used to detect copy-number variation. Of 175 individuals, 18 had a pathogenic mutation and 32 had a variant of uncertain significance (VUS). Most pathogenic mutations (72%) were identified in FBN1. A novel large SMAD3 duplication and FBN1 deletion were identified. Over half who had TAAs or other aortic involvement tested negative for a mutation, suggesting that additional aortopathy genes exist. We anticipate that the clinical sensitivity of at least 10.3% will rise with VUS reclassification and as additional genes are identified and included in the panel. The aortopathy NGS panel aids in the timely molecular diagnosis of individuals with disorders featuring aortopathy and guides proper treatment.

摘要

主动脉病变可定义为主动脉扩张、动脉瘤、夹层和迂曲。家族性主动脉病变可能继发于马方综合征患者的原纤维蛋白-1(FBN1)突变,也可能由其他具有不同但偶尔重叠表型的基因缺陷引起。由于以主动脉病变为特征的疾病存在表型重叠和基因异质性,我们开发了一种二代测序(NGS)检测方法和比较基因组杂交(CGH)芯片,以检测导致胸主动脉瘤(TAA)的10个基因中的突变。在此,我们报告了在ARUP实验室接受主动脉病变检测组检测的175例个体的临床和分子学结果。在测序前,使用杂交捕获技术靶向与遗传性主动脉病变相关的10个基因。分析NGS结果,并使用桑格测序法确认变异。使用阵列CGH检测拷贝数变异。在175例个体中,18例有致病突变,32例有意义未明的变异(VUS)。大多数致病突变(72%)在FBN1中被鉴定出来。鉴定出一个新的大的SMAD3重复和FBN1缺失。超过半数患有TAA或其他主动脉受累的个体检测突变呈阴性,这表明存在其他主动脉病变相关基因。我们预计,随着VUS重新分类以及更多基因被鉴定并纳入检测组,临床敏感性至少将提高到10.3%。主动脉病变NGS检测组有助于对患有主动脉病变相关疾病的个体进行及时的分子诊断,并指导恰当的治疗。

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