Bai Lijing, Liang Ruyi, Yang Yalan, Hou Xinhua, Wang Zishuai, Zhu Shiyun, Wang Chuduan, Tang Zhonglin, Li Kui
State Key Laboratory for Animal Nutrition, Key Laboratory of Farm Animal Genetic Resources and Germplasm Innovation of Ministry of Agriculture of China, Institute of Animal Science, Chinese Academy of Agricultural Sciences, Beijing, China; Agricultural Genome Institute at Shenzhen, Chinese Academy of Agricultural Sciences, Shenzhen, China.
State Key Laboratory for Animal Nutrition, Key Laboratory of Farm Animal Genetic Resources and Germplasm Innovation of Ministry of Agriculture of China, Institute of Animal Science, Chinese Academy of Agricultural Sciences, Beijing, China.
PLoS One. 2015 May 7;10(5):e0119396. doi: 10.1371/journal.pone.0119396. eCollection 2015.
MicroRNAs (miRNAs), which are short (22-24 base pairs), non-coding RNAs, play critical roles in myogenesis. Using Solexa deep sequencing, we detected the expression levels of 229 and 209 miRNAs in swine skeletal muscle at 90 days post-coitus (E90) and 100 days postnatal (D100), respectively. A total of 138 miRNAs were up-regulated on E90, and 31 were up-regulated on D100. Of these, 9 miRNAs were selected for the validation of the small RNA libraries by quantitative RT-PCR (RT-qPCR). We found that miRNA-21 was down-regulated by 17-fold on D100 (P<0.001). Bioinformatics analysis suggested that the transforming growth factor beta-induced (TGFβI) gene was a potential target of miRNA-21. Both dual luciferase reporter assays and western blotting demonstrated that the TGFβI gene was regulated by miRNA-21. Co-expression analysis revealed that the mRNA expression levels of miRNA-21 and TGFβI were negatively correlated (r = -0.421, P = 0.026) in skeletal muscle during the 28 developmental stages. Our results revealed that more miRNAs are expressed in prenatal than in postnatal skeletal muscle. The miRNA-21 is a novel myogenic miRNA that is involved in skeletal muscle development and regulates PI3K/Akt/mTOR signaling by targeting the TGFβI gene.
微小RNA(miRNA)是短链(22 - 24个碱基对)的非编码RNA,在肌肉生成中发挥关键作用。利用Solexa深度测序技术,我们分别检测了猪在交配后90天(E90)和出生后100天(D100)骨骼肌中229个和209个miRNA的表达水平。共有138个miRNA在E90时上调,31个在D100时上调。其中,选择了9个miRNA通过定量逆转录聚合酶链反应(RT-qPCR)对小RNA文库进行验证。我们发现miRNA - 21在D100时下调了17倍(P<0.001)。生物信息学分析表明,转化生长因子β诱导(TGFβI)基因是miRNA - 21的潜在靶标。双荧光素酶报告基因检测和蛋白质免疫印迹均表明TGFβI基因受miRNA - 21调控。共表达分析显示,在28个发育阶段的骨骼肌中,miRNA - 21和TGFβI的mRNA表达水平呈负相关(r = -0.421,P = 0.026)。我们的结果表明,产前骨骼肌中表达的miRNA比产后更多。miRNA - 21是一种新型的肌源性miRNA,参与骨骼肌发育,并通过靶向TGFβI基因调节PI3K/Akt/mTOR信号通路。