Basom Edward J, Spearman James W, Thielges Megan C
Department of Chemistry, Indiana University, Bloomington, Indiana 47405, United States.
J Phys Chem B. 2015 Jun 4;119(22):6620-7. doi: 10.1021/acs.jpcb.5b03896. Epub 2015 May 21.
Conformational heterogeneity and dynamics likely contribute to the remarkable activity of enzymes but are challenging to characterize experimentally. These features are of particular interest within the cytochrome P450 class of monooxygenases, which are of great academic, medicinal, and biotechnological interest as they recognize a broad range of substrates, such as various lipids, steroid precursors, and xenobiotics, including therapeutics. Here, we use linear and 2D IR spectroscopy to characterize the prototypical P450, cytochrome P450cam, bound to three different substrates, camphor, norcamphor, or thiocamphor, which are hydroxylated with high, low, and intermediate regioselectivity, respectively. The data suggest that specific interactions with the substrate drive the population of two different conformations, one that is associated with high regioselectivity and another associated with lower regioselectivity. Although Y96 mediates a hydrogen bond thought necessary to orient the substrate for high regioselectivity, the population and dynamics of the conformational states are largely unaltered by the Y96F mutation. This study suggests that knowledge of the conformational landscape is central to understanding P450 activity, which has important practical ramifications for the design of therapeutics with optimized pharmacokinetics, and the manipulation of P450s, and possibly other enzymes, for biotechnological applications.
构象异质性和动力学可能有助于酶的显著活性,但在实验上难以表征。这些特征在细胞色素P450单加氧酶类别中尤为引人关注,因为它们能够识别广泛的底物,如各种脂质、类固醇前体和包括治疗药物在内的外源性物质,在学术、医学和生物技术领域具有重要意义。在此,我们使用线性和二维红外光谱来表征与三种不同底物(樟脑、降樟脑或硫代樟脑)结合的典型P450——细胞色素P450cam,这三种底物分别以高、低和中等区域选择性被羟基化。数据表明,与底物的特定相互作用驱动了两种不同构象的存在,一种与高区域选择性相关,另一种与较低区域选择性相关。尽管Y96介导了一种被认为是高区域选择性底物定向所必需的氢键,但Y96F突变对构象状态的数量和动力学影响不大。这项研究表明,了解构象格局对于理解P450活性至关重要,这对于设计具有优化药代动力学的治疗药物、操纵P450以及可能的其他酶用于生物技术应用具有重要的实际意义。