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通过水平基因转移,嗜硫地杆菌AM-1中甲基丙烯酸酯氧化还原系统的近期起源

Recent Origin of the Methacrylate Redox System in Geobacter sulfurreducens AM-1 through Horizontal Gene Transfer.

作者信息

Arkhipova Oksana V, Meer Margarita V, Mikoulinskaia Galina V, Zakharova Marina V, Galushko Alexander S, Akimenko Vasilii K, Kondrashov Fyodor A

机构信息

Scryabin's Institute of Biochemistry and Physiology of Microorganisms, Pushchino 142290, Russia.

Bioinformatics and Genomics Programme, Centre for Genomic Regulation (CRG) 88 Dr. Aiguader, 08003 Barcelona, Spain; Universitat Pompeu Fabra (UPF), 08003 Barcelona, Spain.

出版信息

PLoS One. 2015 May 11;10(5):e0125888. doi: 10.1371/journal.pone.0125888. eCollection 2015.

Abstract

The origin and evolution of novel biochemical functions remains one of the key questions in molecular evolution. We study recently emerged methacrylate reductase function that is thought to have emerged in the last century and reported in Geobacter sulfurreducens strain AM-1. We report the sequence and study the evolution of the operon coding for the flavin-containing methacrylate reductase (Mrd) and tetraheme cytochrome с (Mcc) in the genome of G. sulfurreducens AM-1. Different types of signal peptides in functionally interlinked proteins Mrd and Mcc suggest a possible complex mechanism of biogenesis for chromoproteids of the methacrylate redox system. The homologs of the Mrd and Mcc sequence found in δ-Proteobacteria and Deferribacteres are also organized into an operon and their phylogenetic distribution suggested that these two genes tend to be horizontally transferred together. Specifically, the mrd and mcc genes from G. sulfurreducens AM-1 are not monophyletic with any of the homologs found in other Geobacter genomes. The acquisition of methacrylate reductase function by G. sulfurreducens AM-1 appears linked to a horizontal gene transfer event. However, the new function of the products of mrd and mcc may have evolved either prior or subsequent to their acquisition by G. sulfurreducens AM-1.

摘要

新生化功能的起源与进化仍然是分子进化中的关键问题之一。我们研究了最近出现的甲基丙烯酸还原酶功能,该功能被认为是在上个世纪出现的,并在嗜硫还原地杆菌菌株AM-1中被报道。我们报告了嗜硫还原地杆菌AM-1基因组中编码含黄素甲基丙烯酸还原酶(Mrd)和四血红素细胞色素c(Mcc)的操纵子的序列,并研究了其进化。功能上相互关联的蛋白质Mrd和Mcc中不同类型的信号肽表明,甲基丙烯酸氧化还原系统的色蛋白可能存在复杂的生物合成机制。在δ-变形菌和去铁杆菌中发现的Mrd和Mcc序列的同源物也被组织成一个操纵子,它们的系统发育分布表明这两个基因倾向于一起水平转移。具体来说,嗜硫还原地杆菌AM-1的mrd和mcc基因与在其他地杆菌基因组中发现的任何同源物都不是单系的。嗜硫还原地杆菌AM-1获得甲基丙烯酸还原酶功能似乎与水平基因转移事件有关。然而,mrd和mcc产物的新功能可能在嗜硫还原地杆菌AM-1获得它们之前或之后就已经进化了。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/da4f/4427408/4d058363c712/pone.0125888.g001.jpg

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