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Genome Scale Mutational Analysis of Geobacter sulfurreducens Reveals Distinct Molecular Mechanisms for Respiration and Sensing of Poised Electrodes versus Fe(III) Oxides.

作者信息

Chan Chi Ho, Levar Caleb E, Jiménez-Otero Fernanda, Bond Daniel R

机构信息

BioTechnology Institute, University of Minnesota-Twin Cities, St. Paul, Minnesota, USA.

Department of Biochemistry, Molecular Biology, and Biophysics, University of Minnesota-Twin Cities, St. Paul, Minnesota, USA.

出版信息

J Bacteriol. 2017 Sep 5;199(19). doi: 10.1128/JB.00340-17. Print 2017 Oct 1.


DOI:10.1128/JB.00340-17
PMID:28674067
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC5585712/
Abstract

generates electrical current by coupling intracellular oxidation of organic acids to the reduction of proteins on the cell surface that are able to interface with electrodes. This ability is attributed to the bacterium's capacity to respire other extracellular electron acceptors that require contact, such as insoluble metal oxides. To directly investigate the genetic basis of electrode-based respiration, we constructed transposon-insertion sequencing (Tn-Seq) libraries for growth, with soluble fumarate or an electrode as the electron acceptor. Libraries with >33,000 unique insertions and an average of 9 insertions/kb allowed an assessment of each gene's fitness in a single experiment. Mutations in 1,214 different genomic features impaired growth with fumarate, and the significance of 270 genes unresolved by annotation due to the presence of one or more functional homologs was determined. Tn-Seq analysis of -0.1 V versus standard hydrogen electrode (SHE) electrode-grown cells identified mutations in a subset of genes encoding cytochromes, processing systems for proline-rich proteins, sensory networks, extracellular structures, polysaccharides, and metabolic enzymes that caused at least a 50% reduction in apparent growth rate. Scarless deletion mutants of select genes identified via Tn-Seq revealed a new putative porin-cytochrome conduit complex () crucial for growth with electrodes, which was not required for Fe(III) oxide reduction. In addition, four mutants lacking components of a putative methyl-accepting chemotaxis-cyclic dinucleotide sensing network () were defective in electrode colonization but grew normally with Fe(III) oxides. These results suggest that possesses distinct mechanisms for recognition, colonization, and reduction of electrodes compared to Fe(III) oxides. Since metal oxide electron acceptors are insoluble, one hypothesis is that cells sense and reduce metals using the same molecular mechanisms used to form biofilms on electrodes and produce electricity. However, by simultaneously comparing thousands of transposon mutants undergoing electrode-dependent respiration, we discovered new cytochromes and chemosensory proteins supporting growth with electrodes that are not required for metal respiration. This supports an emerging model where recognizes surfaces and forms conductive biofilms using mechanisms distinct from those used for growth with metal oxides. These findings provide a possible explanation for studies that correlate electricity generation with syntrophic interspecies electron transfer by and reveal many previously unrecognized targets for engineering this useful capability in other organisms.

摘要
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ac88/5585712/6cb0b18c1b11/zjb9990945180005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ac88/5585712/e57099e6df96/zjb9990945180001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ac88/5585712/d9419aaae7fe/zjb9990945180002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ac88/5585712/a54a37046f73/zjb9990945180003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ac88/5585712/94de7f860445/zjb9990945180004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ac88/5585712/6cb0b18c1b11/zjb9990945180005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ac88/5585712/e57099e6df96/zjb9990945180001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ac88/5585712/d9419aaae7fe/zjb9990945180002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ac88/5585712/a54a37046f73/zjb9990945180003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ac88/5585712/94de7f860445/zjb9990945180004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ac88/5585712/6cb0b18c1b11/zjb9990945180005.jpg

相似文献

[1]
Genome Scale Mutational Analysis of Geobacter sulfurreducens Reveals Distinct Molecular Mechanisms for Respiration and Sensing of Poised Electrodes versus Fe(III) Oxides.

J Bacteriol. 2017-9-5

[2]
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[3]
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[4]
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[5]
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[6]
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[7]
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引用本文的文献

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[2]
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[3]
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[4]
Isolation and genomic analysis of " MK1, a Gram-positive, Fe(III)-reducing bacterium from the Soudan Underground Mine, an iron-rich Martian analog site.

Appl Environ Microbiol. 2024-8-21

[5]
Nitrogen Fixation and Ammonium Assimilation Pathway Expression of Geobacter sulfurreducens Changes in Response to the Anode Potential in Microbial Electrochemical Cells.

Appl Environ Microbiol. 2023-4-26

[6]
Structure of Geobacter cytochrome OmcZ identifies mechanism of nanowire assembly and conductivity.

Nat Microbiol. 2023-2

[7]
Lack of Specificity in Periplasmic Electron Transfer.

J Bacteriol. 2022-12-20

[8]
Genome-Scale Mutational Analysis of Cathode-Oxidizing ElOx9.

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[9]
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[10]
Evidence of a Streamlined Extracellular Electron Transfer Pathway from Biofilm Structure, Metabolic Stratification, and Long-Range Electron Transfer Parameters.

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本文引用的文献

[1]
Redox potential as a master variable controlling pathways of metal reduction by Geobacter sulfurreducens.

ISME J. 2017-3

[2]
Genetic Identification of a PilT Motor in Reveals a Role for Pilus Retraction in Extracellular Electron Transfer.

Front Microbiol. 2016-10-17

[3]
The Galaxy platform for accessible, reproducible and collaborative biomedical analyses: 2016 update.

Nucleic Acids Res. 2016-7-8

[4]
Hybrid promiscuous (Hypr) GGDEF enzymes produce cyclic AMP-GMP (3', 3'-cGAMP).

Proc Natl Acad Sci U S A. 2016-2-16

[5]
Comparison of Anodic Community in Microbial Fuel Cells with Iron Oxide-Reducing Community.

J Microbiol Biotechnol. 2016-4-28

[6]
Essential Genome of the Metabolically Versatile Alphaproteobacterium Rhodopseudomonas palustris.

J Bacteriol. 2015-12-28

[7]
Direct involvement of ombB, omaB, and omcB genes in extracellular reduction of Fe(III) by Geobacter sulfurreducens PCA.

Front Microbiol. 2015-10-1

[8]
Stall no more at polyproline stretches with the translation elongation factors EF-P and IF-5A.

Mol Microbiol. 2016-1

[9]
Reduction of low potential electron acceptors requires the CbcL inner membrane cytochrome of Geobacter sulfurreducens.

Bioelectrochemistry. 2015-9-5

[10]
Link between capacity for current production and syntrophic growth in Geobacter species.

Front Microbiol. 2015-7-21

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