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用特征方向性时间描述细胞定向迁移。

Describing directional cell migration with a characteristic directionality time.

作者信息

Loosley Alex J, O'Brien Xian M, Reichner Jonathan S, Tang Jay X

机构信息

Department of Physics, Brown University, Providence, RI, USA.

Division of Surgical Research, Department of Surgery, Rhode Island Hospital and the Warren Alpert Medical School of Brown University, Providence, RI, USA.

出版信息

PLoS One. 2015 May 20;10(5):e0127425. doi: 10.1371/journal.pone.0127425. eCollection 2015.

Abstract

Many cell types can bias their direction of locomotion by coupling to external cues. Characteristics such as how fast a cell migrates and the directedness of its migration path can be quantified to provide metrics that determine which biochemical and biomechanical factors affect directional cell migration, and by how much. To be useful, these metrics must be reproducible from one experimental setting to another. However, most are not reproducible because their numerical values depend on technical parameters like sampling interval and measurement error. To address the need for a reproducible metric, we analytically derive a metric called directionality time, the minimum observation time required to identify motion as directionally biased. We show that the corresponding fit function is applicable to a variety of ergodic, directionally biased motions. A motion is ergodic when the underlying dynamical properties such as speed or directional bias do not change over time. Measuring the directionality of nonergodic motion is less straightforward but we also show how this class of motion can be analyzed. Simulations are used to show the robustness of directionality time measurements and its decoupling from measurement errors. As a practical example, we demonstrate the measurement of directionality time, step-by-step, on noisy, nonergodic trajectories of chemotactic neutrophils. Because of its inherent generality, directionality time ought to be useful for characterizing a broad range of motions including intracellular transport, cell motility, and animal migration.

摘要

许多细胞类型可以通过与外部线索耦合来偏向其运动方向。诸如细胞迁移速度及其迁移路径的方向性等特征可以进行量化,以提供指标,从而确定哪些生化和生物力学因素会影响细胞的定向迁移以及影响程度。为了有用,这些指标必须在不同的实验设置之间具有可重复性。然而,大多数指标不可重复,因为它们的数值取决于采样间隔和测量误差等技术参数。为了满足对可重复指标的需求,我们通过分析推导出一种称为方向性时间的指标,即识别有偏向性运动所需的最短观察时间。我们表明相应的拟合函数适用于各种遍历性的、有偏向性的运动。当诸如速度或方向性偏向等潜在动力学特性不随时间变化时,运动就是遍历性的。测量非遍历性运动的方向性不太直接,但我们也展示了如何分析这类运动。通过模拟展示了方向性时间测量的稳健性及其与测量误差的解耦。作为一个实际例子,我们逐步演示了在趋化性中性粒细胞的有噪声、非遍历性轨迹上测量方向性时间的过程。由于其固有的通用性,方向性时间应该有助于表征包括细胞内运输、细胞运动和动物迁移在内的广泛运动。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1c03/4439174/07424d3c8045/pone.0127425.g001.jpg

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