Tapia Fabian J, Gallardo-Escárate Cristian
Department of Oceanography & COPAS South-Austral, University of Concepción, Concepción, Chile; Interdisciplinary Center for Aquaculture Research (INCAR), University of Concepción, Concepción, Chile.
Department of Oceanography, Laboratory of Biotechnology and Aquatic Genomics, University of Concepción, Concepción, Chile; Interdisciplinary Center for Aquaculture Research (INCAR), University of Concepción, Concepción, Chile.
Mar Genomics. 2015 Oct;23:61-5. doi: 10.1016/j.margen.2015.05.005. Epub 2015 May 19.
This study describes the results from transcriptomes sequenced by illumina technology from four populations in the marine snail Tegula atra along central-northern Chile (28-31°S) during summer and winter 2014. In silico differential expression of transcripts annotated to known proteins revealed several local patterns associated to the environmental thermal variability. Herein, northern populations evidenced lower number of genes highly regulated, while southern populations displayed opposite patterns. This relationship could suggest that northern snail populations are more adapted to high temperature variations, enabling specific genes (e.g. HSPs and antioxidant system) to maintain high transcriptional activity under controlled physiological conditions. This transcriptome response or "frontloading" strategy can significantly increase the speed of response to thermal stress, and also be a relevant molecular underpinning to explain the genomic diversity along the Chilean coast.
本研究描述了2014年夏季和冬季,利用Illumina技术对智利中北部(南纬28 - 31°)的四种海洋蜗牛Tegula atra种群进行转录组测序的结果。对注释为已知蛋白质的转录本进行的电子差异表达分析揭示了几种与环境热变异性相关的局部模式。在此,北部种群显示出高度调控的基因数量较少,而南部种群则呈现相反的模式。这种关系可能表明,北部蜗牛种群更适应高温变化,使得特定基因(如热休克蛋白和抗氧化系统)能够在受控的生理条件下维持高转录活性。这种转录组反应或“预加载”策略可以显著提高对热应激的反应速度,也是解释智利海岸沿线基因组多样性的一个相关分子基础。