Serine effects on collision-induced dissociation and photodissociation of peptide cation radicals of the -type.

The serine residue displays specific effects on the dissociations of peptide fragment cation-radicals of the type which are produced by electron transfer dissociation. Energy-resolved collision-induced dissociation (ER-CID), time-resolved infrared multiphoton dissociation (TR-IRMPD), and single-photon UV photodissociation at 355 nm revealed several competitive dissociation pathways consisting of loss of OH radical, water, and backbone cleavages occurring at -terminal and -terminal positions relative to the serine residue. The activation modes using slow-heating and UV photon absorption resulted in different relative intensities of fragment ions. This indicated that the dissociations proceeded through several channels with different energy-dependent kinetics. The experimental data were interpreted with the help of electron structure calculations that provided fully optimized structures and relative energies for and amide isomers of the ions as well as isomerization, dissociation, and transition state energies. UV photon absorption by the ions was due to C-radical amide groups created by ETD that provided a new chromophore absorbing at 355 nm.