• 文献检索
  • 文档翻译
  • 深度研究
  • 学术资讯
  • Suppr Zotero 插件Zotero 插件
  • 邀请有礼
  • 套餐&价格
  • 历史记录
应用&插件
Suppr Zotero 插件Zotero 插件浏览器插件Mac 客户端Windows 客户端微信小程序
定价
高级版会员购买积分包购买API积分包
服务
文献检索文档翻译深度研究API 文档MCP 服务
关于我们
关于 Suppr公司介绍联系我们用户协议隐私条款
关注我们

Suppr 超能文献

核心技术专利:CN118964589B侵权必究
粤ICP备2023148730 号-1Suppr @ 2026

文献检索

告别复杂PubMed语法,用中文像聊天一样搜索,搜遍4000万医学文献。AI智能推荐,让科研检索更轻松。

立即免费搜索

文件翻译

保留排版,准确专业,支持PDF/Word/PPT等文件格式,支持 12+语言互译。

免费翻译文档

深度研究

AI帮你快速写综述,25分钟生成高质量综述,智能提取关键信息,辅助科研写作。

立即免费体验

对甘氨酸-亮氨酸-甘氨酸-甘氨酸-赖氨酸肽双阳离子结构以及电子转移后阳离子自由基解离的综合分析:从电子附着到主链断裂、离子-分子复合物和碎片分离。

Comprehensive analysis of Gly-Leu-Gly-Gly-Lys peptide dication structures and cation-radical dissociations following electron transfer: from electron attachment to backbone cleavage, ion-molecule complexes, and fragment separation.

作者信息

Pepin Robert, Laszlo Kenneth J, Peng Bo, Marek Aleš, Bush Matthew F, Tureček František

机构信息

Department of Chemistry, Bagley Hall, Box 351700, University of Washington , Seattle, Washington 98195-1700, United States.

出版信息

J Phys Chem A. 2014 Jan 9;118(1):308-24. doi: 10.1021/jp411100c. Epub 2013 Dec 18.

DOI:10.1021/jp411100c
PMID:24328203
Abstract

Experimental data from ion mobility measurements and electron transfer dissociation were combined with extensive computational analysis of ion structures and dissociation energetics for Gly-Leu-Gly-Gly-Lys cations and cation radicals. Experimental and computational collision cross sections of (GLGGK + 2H)(2+) ions pointed to a dominant folding motif that is represented in all low free-energy structures. The local folding motifs were preserved in several fragment ions produced by electron transfer dissociation. Gradient optimizations of (GLGGK + 2H)(+•) cation-radicals revealed local energy minima corresponding to distonic zwitterionic structures as well as aminoketyl radicals. Both of these structural types can isomerize to low-energy tautomers that are protonated at the radical-containing amide group forming a new type of intermediates, -C(•)O(-)NH2(+)- and -C(•)(OH)NH2(+)-, respectively. Extensive mapping with B3LYP, M06-2X, and MP2(frozen core) calculations of the potential energy surface of the ground doublet electronic state of (GLGGK + 2H)(+•) provided transition-state and dissociation energies for backbone cleavages of the N-Cα and amide C-N bonds leading to ion-molecule complexes. The complexes can undergo facile prototropic migrations that are catalyzed by the Lys ammonium group and isomerize enolimine c-type fragments to the more stable amide tautomers. In contrast, interfragment hydrogen atom migrations in the complexes were found to have relatively high transition energies and did not compete with fragment separation. The extensive analysis of the intermediate and transition-state energies led to the conclusion that the observed dissociations cannot proceed competitively on the same potential energy surface. The reactive intermediates for the dissociations originate from distinct electronic states that are accessed by electron transfer.

摘要

来自离子淌度测量和电子转移解离的实验数据,与对甘氨酰-亮氨酰-甘氨酰-甘氨酰-赖氨酸阳离子和阳离子自由基的离子结构及解离能的广泛计算分析相结合。(GLGGK + 2H)(2+)离子的实验和计算碰撞截面表明,在所有低自由能结构中都存在一种占主导的折叠基序。局部折叠基序在电子转移解离产生的几个碎片离子中得以保留。(GLGGK + 2H)(+•)阳离子自由基的梯度优化显示出对应于双离子两性离子结构以及氨基酮基自由基的局部能量最小值。这两种结构类型都可以异构化为在含自由基的酰胺基团处质子化的低能互变异构体,分别形成新型中间体-C(•)O(-)NH2(+)-和-C(•)(OH)NH2(+)-。使用B3LYP、M06-2X和MP2(冻结核心)对(GLGGK + 2H)(+•)基态双重电子态的势能面进行广泛映射,提供了N-Cα主链断裂和酰胺C-N键断裂导致离子-分子复合物的过渡态和解离能。这些复合物可以发生由赖氨酸铵基团催化的质子转移迁移,并使烯醇亚胺c型片段异构化为更稳定的酰胺互变异构体。相比之下,发现复合物中的片段间氢原子迁移具有相对较高的过渡能,并且不与片段分离竞争。对中间体和过渡态能量的广泛分析得出结论,观察到的解离不能在同一势能面上竞争性地进行。解离的反应中间体源自通过电子转移进入的不同电子态。

相似文献

1
Comprehensive analysis of Gly-Leu-Gly-Gly-Lys peptide dication structures and cation-radical dissociations following electron transfer: from electron attachment to backbone cleavage, ion-molecule complexes, and fragment separation.对甘氨酸-亮氨酸-甘氨酸-甘氨酸-赖氨酸肽双阳离子结构以及电子转移后阳离子自由基解离的综合分析:从电子附着到主链断裂、离子-分子复合物和碎片分离。
J Phys Chem A. 2014 Jan 9;118(1):308-24. doi: 10.1021/jp411100c. Epub 2013 Dec 18.
2
Perturbing peptide cation-radical electronic states by thioxoamide groups: formation, dissociations, and energetics of thioxopeptide cation-radicals.通过硫代酰胺基团扰乱肽阳离子自由基的电子态:硫代肽阳离子自由基的形成、解离和能量学。
J Phys Chem A. 2013 Feb 14;117(6):1265-75. doi: 10.1021/jp305865q. Epub 2012 Jul 20.
3
The histidine effect. Electron transfer and capture cause different dissociations and rearrangements of histidine peptide cation-radicals.组氨酸效应。电子转移和俘获导致组氨酸肽正离子自由基发生不同的解离和重排。
J Am Chem Soc. 2010 Aug 11;132(31):10728-40. doi: 10.1021/ja907808h.
4
Peptide cation-radicals. A computational study of the competition between peptide N-Calpha bond cleavage and loss of the side chain in the [GlyPhe-NH2 + 2H]+. cation-radical.肽阳离子自由基。对[甘氨酰苯丙氨酸-NH2 + 2H]+阳离子自由基中肽N-Cα键断裂与侧链丢失之间竞争的计算研究。
J Mass Spectrom. 2003 Oct;38(10):1093-104. doi: 10.1002/jms.527.
5
Where does the electron go? Electron distribution and reactivity of peptide cation radicals formed by electron transfer in the gas phase.电子去向何方?气相中电子转移形成的肽阳离子自由基的电子分布与反应活性。
J Am Chem Soc. 2008 Jul 9;130(27):8818-33. doi: 10.1021/ja8019005.
6
Dissecting the proline effect: dissociations of proline radicals formed by electron transfer to protonated Pro-Gly and Gly-Pro dipeptides in the gas phase.剖析脯氨酸效应:气相中电子转移至质子化的脯氨酰甘氨酸和甘氨酰脯氨酸二肽形成的脯氨酸自由基的解离
J Am Chem Soc. 2007 Jun 27;129(25):7936-49. doi: 10.1021/ja0712571. Epub 2007 Jun 6.
7
Electron transfer to protonated beta-alanine N-methylamide in the gas phase: an experimental and computational study of dissociation energetics and mechanisms.气相中电子向质子化β-丙氨酸N-甲基酰胺的转移:解离能和机理的实验与计算研究
J Phys Chem A. 2007 May 24;111(20):4167-80. doi: 10.1021/jp0705020. Epub 2007 Apr 25.
8
Where Does the Electron Go? Stable and Metastable Peptide Cation Radicals Formed by Electron Transfer.电子去了哪里?电子转移形成的稳定和亚稳态肽阳离子自由基。
J Am Soc Mass Spectrom. 2017 Jan;28(1):164-181. doi: 10.1007/s13361-016-1512-z. Epub 2016 Oct 5.
9
Assigning structures to gas-phase peptide cations and cation-radicals. An infrared multiphoton dissociation, ion mobility, electron transfer, and computational study of a histidine peptide ion.分配气相肽阳离子和阳离子自由基的结构。组氨酸肽离子的红外多光子解离、离子淌度、电子转移和计算研究。
J Phys Chem B. 2012 Mar 15;116(10):3445-56. doi: 10.1021/jp3000784. Epub 2012 Mar 6.
10
Transition metals as electron traps. I. Structures, energetics, electron capture, and electron-transfer-induced dissociations of ternary copper-peptide complexes in the gas phase.过渡金属作为电子陷阱。I. 气相中三元铜肽配合物的结构、能量学、电子捕获以及电子转移诱导的解离
J Mass Spectrom. 2009 May;44(5):707-24. doi: 10.1002/jms.1546.

引用本文的文献

1
Spectroscopic Characterization of an Extensive Set of c-Type Peptide Fragment Ions Formed by Electron Transfer Dissociation Suggests Exclusive Formation of Amide Isomers.通过电子转移解离形成的大量c型肽片段离子的光谱表征表明酰胺异构体的唯一形成。
J Phys Chem Lett. 2018 Nov 15;9(22):6404-6411. doi: 10.1021/acs.jpclett.8b02850. Epub 2018 Oct 26.
2
Photodissociative Cross-Linking of Non-covalent Peptide-Peptide Ion Complexes in the Gas Phase.气相中非共价肽-肽离子复合物的光解离交联。
J Am Soc Mass Spectrom. 2018 Aug;29(8):1706-1720. doi: 10.1007/s13361-018-1980-4. Epub 2018 May 7.
3
Spontaneous Isomerization of Peptide Cation Radicals Following Electron Transfer Dissociation Revealed by UV-Vis Photodissociation Action Spectroscopy.
电子转移解离后肽阳离子自由基的自发异构化通过紫外可见光解作用光谱得到揭示。
J Am Soc Mass Spectrom. 2018 Sep;29(9):1768-1780. doi: 10.1007/s13361-017-1871-0. Epub 2018 Jan 16.
4
Where Does the Electron Go? Stable and Metastable Peptide Cation Radicals Formed by Electron Transfer.电子去了哪里?电子转移形成的稳定和亚稳态肽阳离子自由基。
J Am Soc Mass Spectrom. 2017 Jan;28(1):164-181. doi: 10.1007/s13361-016-1512-z. Epub 2016 Oct 5.
5
Toward a Rational Design of Highly Folded Peptide Cation Conformations. 3D Gas-Phase Ion Structures and Ion Mobility Characterization.朝向高度折叠的肽阳离子构象的合理设计。3D 气相离子结构和离子迁移率表征。
J Am Soc Mass Spectrom. 2016 Oct;27(10):1647-60. doi: 10.1007/s13361-016-1437-6. Epub 2016 Jul 11.
6
Does Thermal Breathing Affect Collision Cross Sections of Gas-Phase Peptide Ions? An Ab Initio Molecular Dynamics Study.热呼吸会影响气相肽离子的碰撞截面吗?一项从头算分子动力学研究。
J Phys Chem Lett. 2016 Jul 21;7(14):2765-71. doi: 10.1021/acs.jpclett.6b01187. Epub 2016 Jul 8.
7
Photoleucine Survives Backbone Cleavage by Electron Transfer Dissociation. A Near-UV Photodissociation and Infrared Multiphoton Dissociation Action Spectroscopy Study.光氨酸可通过电子转移解离存活下来,其骨架被打断。一项近紫外光光解和红外多光子解离作用光谱研究。
J Am Soc Mass Spectrom. 2016 Jul;27(7):1176-85. doi: 10.1007/s13361-016-1390-4. Epub 2016 Apr 8.
8
Serine effects on collision-induced dissociation and photodissociation of peptide cation radicals of the -type.丝氨酸对α型肽阳离子自由基的碰撞诱导解离和光解离的影响。
Int J Mass Spectrom. 2015 Feb 15;378:20-30. doi: 10.1016/j.ijms.2014.06.028.
9
Electron transfer reduction of the diazirine ring in gas-phase peptide ions. On the peculiar loss of [NH4O] from photoleucine.气相肽离子中重氮丙环的电子转移还原。关于光亮氨酸中[NH4O]的特殊损失。
J Am Soc Mass Spectrom. 2015 Mar;26(3):415-31. doi: 10.1007/s13361-014-1047-0. Epub 2014 Dec 17.
10
Influence of metal-peptide complexation on fragmentation and inter-fragment hydrogen migration in electron transfer dissociation.金属-肽络合对电子转移解离中碎片化及碎片间氢迁移的影响
J Am Soc Mass Spectrom. 2014 Jun;25(6):1029-39. doi: 10.1007/s13361-014-0855-6. Epub 2014 Mar 27.