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细胞的生物物理特性:通过细胞表面力学的分析和计算研究揭示的潜在细胞行为。

The biophysical nature of cells: potential cell behaviours revealed by analytical and computational studies of cell surface mechanics.

作者信息

Magno Ramiro, Grieneisen Verônica A, Marée Athanasius Fm

机构信息

Theoretical Biology/Bioinformatics, Dept. of Biology, Utrecht University, Padualaan 83584 CH, Utrecht, Netherlands ; Computational and Systems Biology, John Innes Centre,, Norwich Research Park, NR4 7UH, Norwich, UK.

Computational and Systems Biology, John Innes Centre,, Norwich Research Park, NR4 7UH, Norwich, UK.

出版信息

BMC Biophys. 2015 May 12;8:8. doi: 10.1186/s13628-015-0022-x. eCollection 2015.

Abstract

BACKGROUND

The biophysical characteristics of cells determine their shape in isolation and when packed within tissues. Cells can form regular or irregular epithelial structures, round up and form clusters, or deform and attach to substrates. The acquired shape of cells and tissues is a consequence of (i) internal cytoskeletal processes, such as actin polymerisation and cortical myosin contraction, (ii) adhesion molecules within the cell membrane that interact with substrates and neighbouring cells, and (iii) processes that regulate cell volume. Although these processes seem relatively simple, when combined they unleash a rich variety of cellular behaviour that is not readily understandable outside a theoretical framework.

METHODS

We perform a mathematical analysis of a commonly used class of model formalisms that describe cell surface mechanics using an energy-based approach. Predictions are then confirmed through comparison with the computational outcomes of a Vertex model and 2D and 3D simulations of the Cellular Potts model.

RESULTS

The analytical study reveals the complete possible spectrum of single cell behaviour and tissue packing in both 2D and 3D, by taking the typical core elements of cell surface mechanics into account: adhesion, cortical tension and volume conservation. We show that from an energy-based description, forces and tensions can be derived, as well as the prediction of cell behaviour and tissue packing, providing an intuitive and biologically relevant mapping between modelling parameters and experiments.

CONCLUSIONS

The quantitative cellular behaviours and biological insights agree between the analytical study and the diverse computational model formalisms, including the Cellular Potts model. This illustrates the generality of energy-based approaches for cell surface mechanics and highlights how meaningful and quantitative comparisons between models can be established. Moreover, the mathematical analysis reveals direct links between known biophysical properties and specific parameter settings within the Cellular Potts model.

摘要

背景

细胞的生物物理特性决定了它们在孤立状态下以及在组织中聚集时的形状。细胞可以形成规则或不规则的上皮结构,变圆并形成簇,或者变形并附着于基质。细胞和组织所呈现的形状是以下因素的结果:(i)内部细胞骨架过程,如肌动蛋白聚合和皮质肌球蛋白收缩;(ii)细胞膜内与基质和相邻细胞相互作用的粘附分子;(iii)调节细胞体积的过程。尽管这些过程看似相对简单,但它们结合起来会释放出丰富多样的细胞行为,而在理论框架之外则不容易理解。

方法

我们对一类常用的模型形式进行数学分析,这类模型形式使用基于能量的方法来描述细胞表面力学。然后通过与顶点模型的计算结果以及细胞Potts模型的二维和三维模拟结果进行比较来验证预测。

结果

通过考虑细胞表面力学的典型核心要素:粘附、皮质张力和体积守恒,分析研究揭示了二维和三维中单个细胞行为和组织堆积的完整可能范围。我们表明,基于能量的描述可以得出力和张力,以及对细胞行为和组织堆积的预测,从而在建模参数和实验之间提供直观且与生物学相关的映射。

结论

分析研究与包括细胞Potts模型在内的多种计算模型形式在定量细胞行为和生物学见解方面是一致的。这说明了基于能量的细胞表面力学方法的通用性,并突出了如何在模型之间建立有意义的定量比较。此外,数学分析揭示了细胞Potts模型中已知生物物理特性与特定参数设置之间的直接联系。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9996/4446964/ee5918f6da5a/13628_2015_22_Fig1_HTML.jpg

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