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核苷酸糖氨基转移酶中胺基安装立体化学控制的结构基础。

Structural Basis for the Stereochemical Control of Amine Installation in Nucleotide Sugar Aminotransferases.

作者信息

Wang Fengbin, Singh Shanteri, Xu Weijun, Helmich Kate E, Miller Mitchell D, Cao Hongnan, Bingman Craig A, Thorson Jon S, Phillips George N

机构信息

Center for Pharmaceutical Research and Innovation, University of Kentucky College of Pharmacy , 789 South Limestone Street, Lexington, Kentucky 40536-0596, United States ;

Department of Biochemistry, University of Wisconsin-Madison , Madison, Wisconsin 53706, United States.

出版信息

ACS Chem Biol. 2015 Sep 18;10(9):2048-56. doi: 10.1021/acschembio.5b00244. Epub 2015 Jun 23.

Abstract

Sugar aminotransferases (SATs) are an important class of tailoring enzymes that catalyze the 5'-pyridoxal phosphate (PLP)-dependent stereo- and regiospecific installation of an amino group from an amino acid donor (typically L-Glu or L-Gln) to a corresponding ketosugar nucleotide acceptor. Herein we report the strategic structural study of two homologous C4 SATs (Micromonospora echinospora CalS13 and Escherichia coli WecE) that utilize identical substrates but differ in their stereochemistry of aminotransfer. This study reveals for the first time a new mode of SAT sugar nucleotide binding and, in conjunction with previously reported SAT structural studies, provides the basis from which to propose a universal model for SAT stereo- and regiochemical control of amine installation. Specifically, the universal model put forth highlights catalytic divergence to derive solely from distinctions within nucleotide sugar orientation upon binding within a relatively fixed SAT active site where the available ligand bound structures of the three out of four representative C3 and C4 SAT examples provide a basis for the overall model. Importantly, this study presents a new predictive model to support SAT functional annotation, biochemical study and rational engineering.

摘要

糖氨基转移酶(SATs)是一类重要的修饰酶,可催化在5'-磷酸吡哆醛(PLP)依赖下,将氨基酸供体(通常为L-谷氨酸或L-谷氨酰胺)中的氨基立体和区域特异性地安装到相应的酮糖核苷酸受体上。在此,我们报道了两种同源C4 SATs(棘孢小单孢菌CalS13和大肠杆菌WecE)的策略性结构研究,它们利用相同的底物,但氨基转移的立体化学不同。这项研究首次揭示了SAT糖核苷酸结合的新模式,并与先前报道的SAT结构研究相结合,为提出SAT对胺安装的立体和区域化学控制的通用模型提供了基础。具体而言,所提出的通用模型强调催化差异仅源于在相对固定的SAT活性位点内结合时核苷酸糖取向的差异,其中四个代表性C3和C4 SAT示例中的三个的可用配体结合结构为整体模型提供了基础。重要的是,这项研究提出了一个新的预测模型,以支持SAT的功能注释、生化研究和合理工程设计。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/dbae/4575645/556bd245dabc/nihms708041f1.jpg

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