Zobel Sebastian, Benedetti Ilaria, Eisenbach Lara, de Lorenzo Victor, Wierckx Nick, Blank Lars M
Institute of Applied Microbiology, RWTH Aachen University , Worringerweg 1, 52074 Aachen, Germany.
Systems Biology Program, Centro Nacional de Biotecnologia, CSIC , C/Darwin, 3 (Campus de Cantoblanco), Madrid 28049, Spain.
ACS Synth Biol. 2015 Dec 18;4(12):1341-51. doi: 10.1021/acssynbio.5b00058. Epub 2015 Jul 20.
The soil bacterium Pseudomonas putida is increasingly attracting considerable interest as a platform for advanced metabolic engineering through synthetic biology approaches. However, genomic context, gene copy number, and transcription/translation interplay often introduce considerable uncertainty to the design of reliable genetic constructs. In this work, we have established a standardized heterologous expression device in which the promoter strength is the only variable; the remaining parameters of the flow have stable default values. To this end, we tailored a mini-Tn7 delivery transposon vector that inserts the constructs in a single genomic locus of P. putida's chromosome. This was then merged with a promoter insertion site, an unvarying translational coupler, and a downstream location for placing the gene(s) of interest under fixed assembly rules. This arrangement was exploited to benchmark a collection of synthetic promoters with low transcriptional noise in this bacterial host. Growth experiments and flow cytometry with single-copy promoter-GFP constructs revealed a robust, constitutive behavior of these promoters, whose strengths and properties could be faithfully compared. This standardized expression device significantly extends the repertoire of tools available for reliable metabolic engineering and other genetic enhancements of P. putida.
土壤细菌恶臭假单胞菌作为通过合成生物学方法进行先进代谢工程的平台,越来越受到广泛关注。然而,基因组背景、基因拷贝数以及转录/翻译相互作用常常给可靠基因构建体的设计带来相当大的不确定性。在这项工作中,我们建立了一种标准化的异源表达装置,其中启动子强度是唯一变量;流程的其余参数具有稳定的默认值。为此,我们定制了一种mini-Tn7递送转座子载体,该载体将构建体插入恶臭假单胞菌染色体的单个基因组位点。然后将其与启动子插入位点、恒定的翻译偶联器以及用于按照固定组装规则放置目标基因的下游位置相结合。利用这种安排在该细菌宿主中对一组具有低转录噪声的合成启动子进行了基准测试。对单拷贝启动子-GFP构建体进行的生长实验和流式细胞术显示,这些启动子具有稳健的组成型行为,其强度和特性能够得到可靠比较。这种标准化表达装置显著扩展了可用于恶臭假单胞菌可靠代谢工程和其他基因增强的工具库。