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利用保守的伴侣结构域鉴定不同类型的VI型分泌效应蛋白

Identification of divergent type VI secretion effectors using a conserved chaperone domain.

作者信息

Liang Xiaoye, Moore Richard, Wilton Mike, Wong Megan J Q, Lam Linh, Dong Tao G

机构信息

Ecosystem and Public Health, Faculty of Veterinary Medicine, University of Calgary, Calgary, AB, Canada T2N 4Z6; Snyder Institute for Chronic Diseases, University of Calgary, Calgary, AB, Canada T2N 4Z6; Biochemistry and Molecular Biology, Cumming School of Medicine, University of Calgary, Calgary, AB, Canada T2N 4Z6.

Ecosystem and Public Health, Faculty of Veterinary Medicine, University of Calgary, Calgary, AB, Canada T2N 4Z6; Snyder Institute for Chronic Diseases, University of Calgary, Calgary, AB, Canada T2N 4Z6; Biochemistry and Molecular Biology, Cumming School of Medicine, University of Calgary, Calgary, AB, Canada T2N 4Z6

出版信息

Proc Natl Acad Sci U S A. 2015 Jul 21;112(29):9106-11. doi: 10.1073/pnas.1505317112. Epub 2015 Jul 6.

Abstract

The type VI secretion system (T6SS) is a lethal weapon used by many bacteria to kill eukaryotic predators or prokaryotic competitors. Killing by the T6SS results from repetitive delivery of toxic effectors. Despite their importance in dictating bacterial fitness, systematic prediction of T6SS effectors remains challenging due to high effector diversity and the absence of a conserved signature sequence. Here, we report a class of T6SS effector chaperone (TEC) proteins that are required for effector delivery through binding to VgrG and effector proteins. The TEC proteins share a highly conserved domain (DUF4123) and are genetically encoded upstream of their cognate effector genes. Using the conserved TEC domain sequence, we identified a large family of TEC genes coupled to putative T6SS effectors in Gram-negative bacteria. We validated this approach by verifying a predicted effector TseC in Aeromonas hydrophila. We show that TseC is a T6SS-secreted antibacterial effector and that the downstream gene tsiC encodes the cognate immunity protein. Further, we demonstrate that TseC secretion requires its cognate TEC protein and an associated VgrG protein. Distinct from previous effector-dependent bioinformatic analyses, our approach using the conserved TEC domain will facilitate the discovery and functional characterization of new T6SS effectors in Gram-negative bacteria.

摘要

VI型分泌系统(T6SS)是许多细菌用来杀死真核捕食者或原核竞争者的致命武器。T6SS介导的杀伤作用源于毒性效应蛋白的重复传递。尽管T6SS效应蛋白在决定细菌适应性方面具有重要作用,但由于效应蛋白的高度多样性以及缺乏保守的特征序列,对T6SS效应蛋白进行系统预测仍然具有挑战性。在此,我们报道了一类T6SS效应蛋白伴侣(TEC),它们通过与VgrG和效应蛋白结合来介导效应蛋白的传递。TEC蛋白共享一个高度保守的结构域(DUF4123),并且在其同源效应蛋白基因的上游进行遗传编码。利用保守的TEC结构域序列,我们在革兰氏阴性菌中鉴定出了一大类与假定的T6SS效应蛋白相关的TEC基因。我们通过验证嗜水气单胞菌中一个预测的效应蛋白TseC,证实了这一方法。我们发现TseC是一种由T6SS分泌的抗菌效应蛋白,其下游基因tsiC编码同源免疫蛋白。此外,我们证明TseC的分泌需要其同源TEC蛋白和一个相关的VgrG蛋白。与以往依赖效应蛋白的生物信息学分析不同,我们利用保守TEC结构域的方法将有助于革兰氏阴性菌中新T6SS效应蛋白的发现和功能表征。

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