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通过通用并行图形处理单元进行加速多层模拟的基准测试。

Benchmark test of accelerated multi-slice simulation by GPGPU.

作者信息

Hosokawa Fumio, Shinkawa Takao, Arai Yoshihiro, Sannomiya Takumi

机构信息

BioNet Ltd, 2-3-28 Nishikityo, Tachikawa, Tokyo, Japan.

BioNet Ltd, 2-3-28 Nishikityo, Tachikawa, Tokyo, Japan.

出版信息

Ultramicroscopy. 2015 Nov;158:56-64. doi: 10.1016/j.ultramic.2015.06.018. Epub 2015 Jul 2.

Abstract

A fast multi-slice image simulation by parallelized computation using a graphics processing unit (GPU) has been developed. The image simulation contains multiple sets of computing steps, such as Fourier transform and pixel-to-pixel operation. The efficiency of GPU varies depending on the type of calculation. In the effective case of utilizing GPU, the calculation speed is conducted hundreds of times faster than a central processing unit (CPU). The benchmark test of parallelized multi-slice was performed, and the results of contents, such as TEM imaging, STEM imaging and CBD calculation are reported. Some features of the simulation software are also introduced.

摘要

已经开发出一种通过使用图形处理单元(GPU)进行并行计算的快速多切片图像模拟方法。该图像模拟包含多组计算步骤,例如傅里叶变换和逐像素操作。GPU的效率因计算类型而异。在有效利用GPU的情况下,计算速度比中央处理器(CPU)快数百倍。进行了并行多切片的基准测试,并报告了诸如透射电子显微镜成像(TEM成像)、扫描透射电子显微镜成像(STEM成像)和对比度传递函数(CBD)计算等内容的结果。还介绍了模拟软件的一些功能。

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