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针对组织因子的小干扰RNA处理的小鼠心肌细胞HL-1的蛋白质组学分析数据。

Data for proteomic analysis of murine cardiomyocytic HL-1 cells treated with siRNA against tissue factor.

作者信息

Brioschi Maura, Lento Sabrina, Barcella Simona, Nasim Md Talat, Ghilardi Stefania, Barbieri Silvia Stella, Tremoli Elena, Banfi Cristina

机构信息

Centro Cardiologico Monzino IRCCS, Milano, Italy.

National Institute for Health Research Comprehensive Biomedical Research Centre, King׳s College London, UK ; Department of Medical and Molecular Genetics, King׳s College London, UK ; Bradford School of Pharmacy, School of Life Sciences, University of Bradford, UK.

出版信息

Data Brief. 2015 Feb 25;3:117-9. doi: 10.1016/j.dib.2015.02.005. eCollection 2015 Jun.

DOI:10.1016/j.dib.2015.02.005
PMID:26217730
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC4510070/
Abstract

This data article is related to the research article entitled Proteomics of Tissue Factor silencing in cardiomyocytic cells reveals a new role for this coagulation factor in splicing machinery control by Lento et al. [1]. Tissue Factor (TF) is a key player in the coagulation cascade, but it has additional functions ranging from angiogenesis, tumour invasion and, in the heart, the maintenance of the integrity of cardiac cells. This article reports the nano-LC-MS(E) analysis of the cardiomyocytic HL-1 cell line proteome and describes the results obtained from a Gene Ontology analysis of those proteins affected by TF-gene silencing.

摘要

本数据文章与Lento等人发表的题为《心肌细胞中组织因子沉默的蛋白质组学揭示了这种凝血因子在剪接机制控制中的新作用》的研究文章相关[1]。组织因子(TF)是凝血级联反应中的关键因子,但它还具有其他功能,包括血管生成、肿瘤侵袭,以及在心脏中维持心肌细胞的完整性。本文报道了心肌细胞HL-1细胞系蛋白质组的纳升液相色谱-质谱/质谱(nano-LC-MS(E))分析,并描述了对受TF基因沉默影响的蛋白质进行基因本体分析所获得的结果。

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Data for proteomic analysis of murine cardiomyocytic HL-1 cells treated with siRNA against tissue factor.针对组织因子的小干扰RNA处理的小鼠心肌细胞HL-1的蛋白质组学分析数据。
Data Brief. 2015 Feb 25;3:117-9. doi: 10.1016/j.dib.2015.02.005. eCollection 2015 Jun.
2
Proteomics of tissue factor silencing in cardiomyocytic cells reveals a new role for this coagulation factor in splicing machinery control.心肌细胞中组织因子沉默的蛋白质组学揭示了这种凝血因子在剪接机制控制中的新作用。
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本文引用的文献

1
Proteomics of tissue factor silencing in cardiomyocytic cells reveals a new role for this coagulation factor in splicing machinery control.心肌细胞中组织因子沉默的蛋白质组学揭示了这种凝血因子在剪接机制控制中的新作用。
J Proteomics. 2015 Apr 24;119:75-89. doi: 10.1016/j.jprot.2015.01.021. Epub 2015 Feb 8.
2
A mass spectrometry-based workflow for the proteomic analysis of in vitro cultured cell subsets isolated by means of laser capture microdissection.一种基于质谱的工作流程,用于对通过激光捕获显微切割分离的体外培养细胞亚群进行蛋白质组学分析。
Anal Bioanal Chem. 2014 May;406(12):2817-25. doi: 10.1007/s00216-014-7724-9. Epub 2014 Mar 16.
3
Proteomic analysis of endothelial cell secretome: a means of studying the pleiotropic effects of Hmg-CoA reductase inhibitors.内皮细胞分泌组的蛋白质组学分析:研究 HMG-CoA 还原酶抑制剂多效性作用的一种手段。
J Proteomics. 2013 Jan 14;78:346-61. doi: 10.1016/j.jprot.2012.10.003. Epub 2012 Oct 17.
4
Database searching and accounting of multiplexed precursor and product ion spectra from the data independent analysis of simple and complex peptide mixtures.对简单和复杂肽混合物进行数据独立分析时,对多重前体和产物离子光谱的数据库搜索与核算。
Proteomics. 2009 Mar;9(6):1696-719. doi: 10.1002/pmic.200800564.
5
The detection, correlation, and comparison of peptide precursor and product ions from data independent LC-MS with data dependant LC-MS/MS.来自数据非依赖型液相色谱-质谱法(LC-MS)的肽前体离子和产物离子与数据依赖型液相色谱-串联质谱法(LC-MS/MS)的检测、关联及比较。
Proteomics. 2009 Mar;9(6):1683-95. doi: 10.1002/pmic.200800562.
6
BiNGO: a Cytoscape plugin to assess overrepresentation of gene ontology categories in biological networks.BiNGO:一款用于评估基因本体类别在生物网络中过度代表性的Cytoscape插件。
Bioinformatics. 2005 Aug 15;21(16):3448-9. doi: 10.1093/bioinformatics/bti551. Epub 2005 Jun 21.
7
Cardiac physiology at the cellular level: use of cultured HL-1 cardiomyocytes for studies of cardiac muscle cell structure and function.细胞水平的心脏生理学:利用培养的HL-1心肌细胞研究心肌细胞的结构与功能。
Am J Physiol Heart Circ Physiol. 2004 Mar;286(3):H823-9. doi: 10.1152/ajpheart.00986.2003.